ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 912.00 0.07 0.75 71.08 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 3952.00 0.32 3.26 63.52 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 524447.00 42.71 432.54 83.39 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 126827.00 98.23 104.60 100.0 RPS8-207 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 274.00 5.29 0.23 100.0 RPL7A-206 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 1866.00 36.02 1.54 100.0 RPL7A-206 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 570.00 11.00 0.47 100.0 RPL7A-206 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 883.00 0.10 0.73 100.0 RPL21-209 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 186.00 0.02 0.15 100.0 RPL21-209 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 403472.00 47.52 332.77 99.64 RPL21-209 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 434265.00 51.14 358.17 94.88 RPL21-209 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 33.00 0.00 0.03 100.0 RPL21-209 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 18.00 51.43 0.01 100.0 GABRE-209 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 469.00 0.09 0.39 100.0 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 113062.00 21.33 93.25 93.99 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 320.00 0.06 0.26 100.0 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 7904.00 1.49 6.52 100.0 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 2436.00 0.46 2.01 100.0 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 1159.00 0.22 0.96 21.03 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 385072.00 72.64 317.59 99.63 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 13.00 0.00 0.01 100.0 RPL13A-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 1.00 0.00 0.00 100.0 RPL7A-207 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 48042.00 78.05 39.62 84.11 RPL7A-207 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 617.00 1.00 0.51 100.0 RPL7A-207 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 24.00 0.04 0.02 100.0 RPL7A-207 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)