ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 12.00 85.71 0.01 100.0 MIR889-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 23029.00 87.66 18.99 100.0 SNORD111-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 4011.00 44.31 3.31 65.09 SNORD88A-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 53.00 98.15 0.04 100.0 MIR548K-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 120.00 65.93 0.10 100.0 MIR320B2-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 27.00 93.10 0.02 100.0 MIR1271-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 246.00 0.15 0.20 100.0 SNORD100-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 163909.00 97.21 135.19 100.0 SNORD100-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1563.00 0.93 1.29 100.0 SNORD100-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 139.00 0.08 0.11 100.0 SNORD100-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 354.00 14.26 0.29 100.0 SNORD111B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 178.00 7.74 0.15 100.0 RNU2-36P-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 124.00 5.39 0.10 100.0 RNU2-36P-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 298.00 0.13 0.25 100.0 SNORD19C-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 209870.00 90.65 173.09 92.53 SNORD19C-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 581748.00 91.07 479.80 95.36 SNORD12B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 13507.00 2.11 11.14 100.0 SNORD12B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 1598.00 0.25 1.32 100.0 SNORD12B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 104.00 40.62 0.09 100.0 Y_RNA.609-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 16.00 27.59 0.01 100.0 Y_RNA.612-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 4677.00 8.16 3.86 100.0 SNORD71-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 15.00 0.03 0.01 100.0 SNORD71-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 50234.00 87.68 41.43 96.29 SNORD71-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 462.00 70.86 0.38 89.02 MIR194-2HG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 159.00 24.39 0.13 70.04 MIR194-2HG-201 lncRNA neural progenitor cell (In vitro differentiated cells)