ENCFF193XIP

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 18.00 30.51 0.01 100.0 MIR708-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 33.00 82.50 0.03 100.0 MIR509-3-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 6.00 60.00 0.00 100.0 MIR543-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 257.00 91.79 0.21 100.0 MIR301B-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 642.00 48.09 0.53 72.46 RNU1-82P-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 153.00 10.17 0.13 62.7 SNORD66-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 213.00 14.15 0.18 100.0 SNORD66-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 364.00 24.19 0.30 100.0 SNORD66-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 47.00 3.12 0.04 100.0 SNORD66-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 10.00 38.46 0.01 100.0 U3.17-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 362.00 30.27 0.30 100.0 SNORD17-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 736.00 35.92 0.61 100.0 SNORD72-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 7518.00 84.25 6.20 100.0 SNORD70B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 801.00 43.99 0.66 96.86 RNY4P18-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 6563.00 38.84 5.41 100.0 SNORD90-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 7782.00 46.06 6.42 78.78 SNORD90-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 266.00 0.20 0.22 100.0 SNORD69-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 126149.00 97.08 104.04 100.0 SNORD69-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 426.00 0.33 0.35 100.0 SNORD69-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 352.00 0.27 0.29 100.0 SNORD69-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 11563.00 73.91 9.54 94.45 SNORD70-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 180.00 1.03 0.15 100.0 B4GALNT2-202 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 13996.00 80.22 11.54 89.35 B4GALNT2-202 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 260.00 80.25 0.21 100.0 NDE1-202 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 114.00 66.28 0.09 100.0 MIR887-201 miRNA neural progenitor cell (In vitro differentiated cells)