ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 79.00 0.06 0.30 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 365.00 0.27 1.39 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 30326.00 22.24 115.31 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 53.00 0.04 0.20 100.0 GAS5-230 retained intron gastroesophageal sphincter (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 75.00 13.79 0.29 100.0 FTX-219 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 290.00 53.31 1.10 93.25 FTX-219 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 1142.00 5.27 4.34 61.33 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 2622.00 12.11 9.97 82.9 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 5313.00 24.54 20.20 79.69 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 720.00 3.33 2.74 38.67 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 2677.00 12.36 10.18 74.13 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 3377.00 15.60 12.84 100.0 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 579.00 2.67 2.20 100.0 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 1118.00 5.16 4.25 100.0 CTC1-214 protein coding gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 1464.00 1.94 5.57 71.1 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 12501.00 16.59 47.53 88.36 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 512.00 0.68 1.95 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 680.00 0.90 2.59 56.11 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 53.00 0.07 0.20 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 60.00 0.08 0.23 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 239.00 0.32 0.91 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 400.00 0.53 1.52 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 82.00 0.11 0.31 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 2527.00 3.35 9.61 13.63 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 491.00 0.65 1.87 100.0 ENST00000651540 lncRNA gastroesophageal sphincter (Tissue)