ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 304.00 0.23 1.16 8.91 MT-TE-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 650.00 0.49 2.47 100.0 MT-TE-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 102259.00 76.98 388.82 89.23 MT-TE-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387459.1 ENST00000387459.1_1_62_+ 1–62 763.00 0.57 2.90 85.73 MT-TE-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 12.00 0.01 0.05 100.0 MT-TE-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 3510.00 2.64 13.35 92.03 MT-TE-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 311.00 0.23 1.18 100.0 MT-TE-201 Mt tRNA gastroesophageal sphincter (Tissue)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 281.00 6.10 1.07 100.0 MT-RNR1-201 Mt rRNA gastroesophageal sphincter (Tissue)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 1438.00 31.20 5.47 100.0 MT-RNR1-201 Mt rRNA gastroesophageal sphincter (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 102.00 68.92 0.39 100.0 MIR454-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 122.00 70.93 0.46 100.0 MIR501-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 281.00 90.35 1.07 100.0 MIR769-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 1158.00 62.46 4.40 100.0 KRTAP19-1-201 protein coding gastroesophageal sphincter (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 13.00 41.94 0.05 100.0 MIR708-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 5.00 71.43 0.02 100.0 MIR509-3-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 168.00 60.65 0.64 77.06 RNU1-82P-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 214.00 1.77 0.81 100.0 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 635.00 5.26 2.41 100.0 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 2933.00 24.28 11.15 74.33 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 1111.00 9.20 4.22 100.0 SNORD66-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 3.00 60.00 0.01 100.0 U3.17-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 594.00 85.71 2.26 100.0 SNORD17-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 35.00 39.33 0.13 100.0 SNORD72-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 186.00 36.76 0.71 100.0 SNORD70B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 75171.00 89.32 285.82 95.58 RNY4P18-201 misc RNA gastroesophageal sphincter (Tissue)