ENCFF181JNF

Library Details

Organism: Homo Sapiens
Biosample: gastroesophageal sphincter (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR866ZSG
Description: Part of ENCODE experiment ENCSR866ZSG. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagogastric junction tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 386.00 6.64 1.47 61.66 SNORD90-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 5063.00 87.16 19.25 100.0 SNORD90-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 9971.00 81.22 37.91 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 1207.00 9.83 4.59 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 327.00 2.66 1.24 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 97.00 0.79 0.37 100.0 SNORD69-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 184.00 25.95 0.70 33.27 SNORD70-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 67400.00 63.04 256.28 79.7 B4GALNT2-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 1091.00 1.02 4.15 100.0 B4GALNT2-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 255.00 77.27 0.97 100.0 NDE1-202 protein coding gastroesophageal sphincter (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 7.00 5.30 0.03 100.0 MIR887-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 9.00 100.00 0.03 100.0 MIR889-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 708.00 52.41 2.69 100.0 SNORD111-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 327.00 75.17 1.24 95.61 SNORD88A-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 25.00 100.00 0.10 100.0 MIR548K-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 97.00 57.40 0.37 100.0 MIR320B2-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 18.00 94.74 0.07 100.0 MIR1271-201 miRNA gastroesophageal sphincter (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 53.00 0.96 0.20 100.0 SNORD100-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 3062.00 55.73 11.64 100.0 SNORD100-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1602.00 29.16 6.09 100.0 SNORD100-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 131.00 2.38 0.50 100.0 SNORD100-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 2813.00 69.94 10.70 100.0 SNORD111B-201 snoRNA gastroesophageal sphincter (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 415.00 7.98 1.58 100.0 RNU2-36P-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 538.00 10.35 2.05 100.0 RNU2-36P-201 snRNA gastroesophageal sphincter (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 9449.00 95.51 35.93 99.12 SNORD19C-201 snoRNA gastroesophageal sphincter (Tissue)