ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 7991.00 82.89 35.76 97.67 MIR99AHG-370 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 27.00 100.00 0.12 100.0 HPS4-237 retained intron esophagus muscularis mucosa (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 22.00 81.48 0.10 100.0 MEG8-253 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 58.00 50.00 0.26 100.0 MEG9-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 2.00 1.72 0.01 100.0 MEG9-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 4.00 3.45 0.02 100.0 MEG9-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 228.00 13.66 1.02 100.0 DNAJC5-203 nonsense mediated decay esophagus muscularis mucosa (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 546.00 30.38 2.44 100.0 ENST00000707189 TEC esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 731.00 2.42 3.27 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 8381.96 27.70 37.51 31.58 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 1.00 0.00 0.00 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 36.00 0.12 0.16 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 19817.12 65.49 88.68 70.11 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 312.00 1.03 1.40 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 33.00 0.11 0.15 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 27.00 0.09 0.12 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 46.00 0.15 0.21 100.0 MIR17HG-214 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 1617.00 3.44 7.24 100.0 SNHG32-223 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 206.00 0.44 0.92 100.0 SNHG32-223 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 8.00 0.02 0.04 100.0 SNHG32-223 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 1158.00 2.46 5.18 74.9 SNHG32-223 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 43332.00 92.09 193.91 100.0 SNHG32-223 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 10560.00 92.00 47.26 98.67 SNHG32-227 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 428.00 3.73 1.92 100.0 SNHG32-227 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 7.00 0.06 0.03 100.0 SNHG32-227 lncRNA esophagus muscularis mucosa (Tissue)