ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 413.00 0.54 1.85 60.29 MEG8-251 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 298.00 0.39 1.33 43.13 MEG8-251 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 72021.00 94.64 322.30 98.93 MEG8-251 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 1604.00 2.11 7.18 91.24 MEG8-251 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 1.00 0.00 0.00 100.0 MEG8-251 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 19005.00 63.00 85.05 90.64 SNHG14-336 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 10566.00 35.03 47.28 62.08 SNHG14-336 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 18022.00 91.52 80.65 98.4 SNHG14-341 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 193.00 16.25 0.86 100.0 NCL-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 336.00 43.24 1.50 100.0 FMN2-209 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 2195.00 44.94 9.82 100.0 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 16.00 0.33 0.07 100.0 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 75.00 1.54 0.34 43.1 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 86.00 1.76 0.38 100.0 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 5.00 0.10 0.02 100.0 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 99.00 2.03 0.44 56.9 LINC02739-203 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 1.00 50.00 0.00 100.0 MIR124-1HG-216 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 164.00 24.85 0.73 100.0 SNHG10-212 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 7177.84 28.15 32.12 28.83 SNHG19-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 17623.86 69.11 78.87 79.74 SNHG19-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 1942.00 73.78 8.69 100.0 MIR222HG-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 409.00 15.54 1.83 79.11 MIR222HG-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 17.00 0.65 0.08 100.0 MIR222HG-206 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 84.00 45.90 0.38 100.0 RPSA-216 retained intron esophagus muscularis mucosa (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1085.00 11.25 4.86 88.93 MIR99AHG-370 lncRNA esophagus muscularis mucosa (Tissue)