ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 3.00 0.03 0.01 100.0 SNHG32-227 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 570.00 82.73 2.55 100.0 B4GALT1-203 nonsense mediated decay esophagus muscularis mucosa (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 427.00 6.85 1.91 100.0 ENST00000722183 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 523.00 8.39 2.34 87.31 ENST00000722183 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 84.00 1.35 0.38 100.0 ENST00000722183 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 2.00 11.11 0.01 100.0 MIR34BHG-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 4961.00 84.69 22.20 88.51 THBS3-AS1-228 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 2.00 33.33 0.01 100.0 MIR200CHG-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 201.00 12.34 0.90 100.0 SNHG16-266 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 453.00 27.81 2.03 100.0 SNHG16-266 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 61.00 3.74 0.27 100.0 SNHG16-266 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 178.00 10.93 0.80 100.0 SNHG16-266 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 2.00 50.00 0.01 100.0 MEG8-261 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 57.00 32.95 0.26 100.0 NR2F2-AS1-327 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 583.00 2.32 2.61 55.26 ENST00000747675 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 16412.00 65.20 73.44 100.0 ENST00000747675 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 277.00 1.10 1.24 32.21 ENST00000747675 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 195.00 0.77 0.87 25.06 ENST00000747675 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 4532.00 18.00 20.28 100.0 ENST00000747675 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 16814.00 37.36 75.24 92.95 SNHG26-250 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 21636.00 48.07 96.82 97.42 SNHG26-250 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 102.00 16.67 0.46 100.0 LINC02422-207 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 99.00 7.48 0.44 100.0 ENST00000753088 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000753088.1 ENST00000753088.1_508_542_+ 508–542 295.00 22.30 1.32 100.0 ENST00000753088 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000756336.1 ENST00000756336.1_98_127_+ 98–127 317.49 0.41 1.42 13.77 ENST00000756336 lncRNA esophagus muscularis mucosa (Tissue)