ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 17.00 0.00 0.08 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 19.00 0.00 0.09 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 6870.00 1.57 30.74 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 2647.00 0.61 11.85 90.13 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 446.21 0.10 2.00 36.97 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 422.00 0.10 1.89 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 1665.00 0.38 7.45 67.88 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 893.00 0.20 4.00 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 20.00 0.00 0.09 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 34.00 0.01 0.15 100.0 SNHG1-248 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 17350.00 19.42 77.64 100.0 SNHG14-315 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 48528.00 54.31 217.16 96.28 SNHG14-315 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 16321.00 18.27 73.04 90.28 SNHG14-315 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 376.00 0.04 1.68 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 1624.00 0.16 7.27 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 521820.94 51.10 2335.17 54.61 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 531.00 0.05 2.38 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 75.00 0.01 0.34 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 498270.08 48.79 2229.78 49.79 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 4955.00 0.49 22.17 93.56 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1355.00 0.13 6.06 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 579.00 0.06 2.59 100.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 8.00 0.00 0.04 80.0 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 2546.00 0.25 11.39 98.49 SNHG5-273 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 209.00 15.31 0.94 75.18 SNHG14-323 lncRNA esophagus muscularis mucosa (Tissue)