ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 378450.00 85.36 1693.58 90.93 RPL23A-208 retained intron esophagus muscularis mucosa (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 62485.00 14.09 279.62 92.7 RPL23A-208 retained intron esophagus muscularis mucosa (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 54.00 2.25 0.24 100.0 MIR133A1HG-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 3241.00 4.66 14.50 60.04 RPL17-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 9718.00 13.98 43.49 57.51 RPL17-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 208.00 0.30 0.93 100.0 RPL17-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 40277.00 57.95 180.24 94.82 RPL17-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 13107.00 18.86 58.65 95.05 RPL17-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 20.00 24.69 0.09 37.04 ENST00000582320 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 7.00 8.64 0.03 100.0 ENST00000582320 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 85.00 0.62 0.38 100.0 RPL17-214 retained intron esophagus muscularis mucosa (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 6224.30 45.16 27.85 53.38 RPL17-214 retained intron esophagus muscularis mucosa (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 6337.46 45.98 28.36 49.91 RPL17-214 retained intron esophagus muscularis mucosa (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 187429.00 98.99 838.75 99.95 SNORD43-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 20.00 0.01 0.09 100.0 SNORD43-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 41.00 32.80 0.18 100.0 MIR151B-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 131.00 7.14 0.59 100.0 SNORD3A-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 1364.00 75.23 6.10 100.0 SNORD92-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 1174.00 48.19 5.25 100.0 NSRP1-214 protein coding esophagus muscularis mucosa (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 874.00 35.88 3.91 83.16 NSRP1-214 protein coding esophagus muscularis mucosa (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 267.00 2.53 1.19 100.0 MIR23AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 2849.00 27.00 12.75 96.28 MIR23AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1744.00 16.53 7.80 83.56 MIR23AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 2934.00 27.80 13.13 96.13 MIR23AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 643.00 6.09 2.88 73.32 MIR23AHG-201 lncRNA esophagus muscularis mucosa (Tissue)