ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 5.00 12.82 0.02 100.0 ODAD3-204 nonsense mediated decay esophagus muscularis mucosa (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 775.00 3.11 3.47 100.0 VMP1-217 retained intron esophagus muscularis mucosa (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 57.00 0.23 0.26 100.0 VMP1-217 retained intron esophagus muscularis mucosa (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 17012.00 68.23 76.13 75.76 VMP1-217 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 167.00 0.07 0.75 100.0 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 165366.03 72.27 740.02 76.26 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 54687.80 23.90 244.73 24.19 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 815.00 0.36 3.65 87.07 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 12.00 0.01 0.05 100.0 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 1.00 50.00 0.00 100.0 ENST00000597420 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 16.00 3.16 0.07 100.0 RPS11-206 retained intron esophagus muscularis mucosa (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 218.00 43.00 0.98 100.0 RPS11-206 retained intron esophagus muscularis mucosa (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 5843737.00 68.54 26150.96 70.1 CARMN-209 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 240.00 46.60 1.07 100.0 ENST00000602478 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 401.00 54.86 1.79 100.0 PPFIA1P1-201 processed pseudogene esophagus muscularis mucosa (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 384.00 43.10 1.72 100.0 SNORD114-21-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 293.00 32.88 1.31 100.0 SNORD114-21-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 597.00 70.07 2.67 100.0 SNORD115-40-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 4661.00 97.80 20.86 100.0 MIR98-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 834.00 87.42 3.73 100.0 SNORD113-5-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 100.00 77.52 0.45 100.0 MIR15A-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 382.00 60.16 1.71 100.0 SNHG21-206 retained intron esophagus muscularis mucosa (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 68.00 75.56 0.30 100.0 SNORD11B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 1223.00 56.44 5.47 100.0 SNORD91B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 5117.00 29.29 22.90 32.79 SNORD91A-201 snoRNA esophagus muscularis mucosa (Tissue)