ENCFF106XDA

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR295NAK
Description: Part of ENCODE experiment ENCSR295NAK. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 313214.00 92.04 1401.65 95.58 ENST00000565336 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 7046.00 2.07 31.53 78.43 ENST00000565336 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 2126.00 0.35 9.51 100.0 RBMX-210 retained intron esophagus muscularis mucosa (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1686.00 0.27 7.54 100.0 RBMX-210 retained intron esophagus muscularis mucosa (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 371.00 0.06 1.66 100.0 RBMX-210 retained intron esophagus muscularis mucosa (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 397812.00 64.77 1780.23 65.75 RBMX-210 retained intron esophagus muscularis mucosa (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 498.00 50.61 2.23 100.0 RPL4-214 retained intron esophagus muscularis mucosa (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 42.00 4.27 0.19 100.0 RPL4-214 retained intron esophagus muscularis mucosa (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 79.00 0.26 0.35 100.0 POLG-DT-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 19642.61 65.28 87.90 83.29 POLG-DT-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 3060.50 10.17 13.70 13.18 POLG-DT-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 1412.00 36.87 6.32 100.0 ENST00000570843 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 1627.00 78.03 7.28 100.0 MIR497HG-207 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 18941.00 97.87 84.76 99.03 MIR22HG-212 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 11006.00 91.83 49.25 95.31 SNORD53B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 172.00 1.44 0.77 55.84 SNORD53B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 136.00 1.13 0.61 44.16 SNORD53B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 26.00 45.61 0.12 100.0 ENST00000578036 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 258.00 81.65 1.15 100.0 RPL23A-207 protein coding esophagus muscularis mucosa (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 244.00 91.04 1.09 100.0 MIR744-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 208.00 70.99 0.93 100.0 MIR378C-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 309.00 74.82 1.38 79.64 MIR142HG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 3.00 0.73 0.01 2.31 MIR142HG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 204.52 0.05 0.92 67.95 RPL23A-208 retained intron esophagus muscularis mucosa (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 76.43 0.02 0.34 41.54 RPL23A-208 retained intron esophagus muscularis mucosa (Tissue)