ENCFF081QYT

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR289GGY
Description: Part of ENCODE experiment ENCSR289GGY. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 3997.00 7.23 7.30 96.92 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 23117.00 41.81 42.20 94.19 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 13393.00 24.22 24.45 100.0 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 7786.00 14.08 14.21 91.38 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 50.00 0.09 0.09 100.0 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 640.00 1.16 1.17 53.2 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 750.00 1.36 1.37 78.53 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 570.00 1.03 1.04 68.26 SNHG14-224 lncRNA esophagus squamous epithelium (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 1683.86 9.13 3.07 48.55 5S_rRNA.20-201 rRNA pseudogene esophagus squamous epithelium (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 1530.00 8.82 2.79 100.0 HSPA9-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 8155.00 47.03 14.89 68.08 HSPA9-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 6157.00 50.28 11.24 100.0 DNM3OS-205 lncRNA esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 1637.00 0.08 2.99 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 1644.00 0.08 3.00 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 1042.00 0.05 1.90 83.29 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 7864.00 0.41 14.35 93.05 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 137.00 0.01 0.25 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 35.00 0.00 0.06 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 790.00 0.04 1.44 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1064002.00 54.88 1942.18 99.83 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 706.00 0.04 1.29 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 4913.00 0.25 8.97 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 1986.00 0.10 3.63 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 994.00 0.05 1.81 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 3441.00 0.18 6.28 100.0 GAS5-230 retained intron esophagus squamous epithelium (Tissue)