ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 305.00 94.14 1.46 100.0 MIR744-201 miRNA transverse colon (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 171.00 72.46 0.82 100.0 MIR378C-201 miRNA transverse colon (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 2774.00 85.12 13.30 90.27 MIR142HG-201 lncRNA transverse colon (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 1.00 0.03 0.00 100.0 MIR142HG-201 lncRNA transverse colon (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 24.00 0.74 0.12 3.5 MIR142HG-201 lncRNA transverse colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 224.04 0.06 1.07 53.34 RPL23A-208 retained intron transverse colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 279.34 0.08 1.34 54.45 RPL23A-208 retained intron transverse colon (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 283232.00 78.48 1357.90 87.55 RPL23A-208 retained intron transverse colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 75113.00 20.81 360.11 90.08 RPL23A-208 retained intron transverse colon (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 2.00 0.65 0.01 100.0 MIR133A1HG-202 lncRNA transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 2839.00 1.98 13.61 50.18 RPL17-211 retained intron transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 4962.00 3.47 23.79 16.08 RPL17-211 retained intron transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 718.00 0.50 3.44 100.0 RPL17-211 retained intron transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 113216.00 79.11 542.79 98.43 RPL17-211 retained intron transverse colon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 17749.00 12.40 85.09 97.87 RPL17-211 retained intron transverse colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1313.00 4.29 6.29 100.0 RPL17-214 retained intron transverse colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 14134.66 46.18 67.77 55.1 RPL17-214 retained intron transverse colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 12794.94 41.81 61.34 46.74 RPL17-214 retained intron transverse colon (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 3.00 0.00 0.01 100.0 SNORD43-201 snoRNA transverse colon (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 839823.00 99.44 4026.35 99.92 SNORD43-201 snoRNA transverse colon (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 118.00 0.01 0.57 100.0 SNORD43-201 snoRNA transverse colon (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 35.00 26.32 0.17 100.0 MIR151B-201 miRNA transverse colon (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 465.00 4.34 2.23 100.0 SNORD3A-201 snoRNA transverse colon (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 7866.00 83.98 37.71 100.0 SNORD92-201 snoRNA transverse colon (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 3229.00 43.82 15.48 100.0 NSRP1-214 protein coding transverse colon (Tissue)