ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 2887.00 39.18 13.84 80.62 NSRP1-214 protein coding transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 788.00 20.12 3.78 100.0 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 675.00 17.24 3.24 94.14 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 500.00 12.77 2.40 82.37 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 789.00 20.15 3.78 92.39 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 306.00 7.81 1.47 77.66 MIR23AHG-201 lncRNA transverse colon (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 166.00 35.93 0.80 100.0 ODAD3-204 nonsense mediated decay transverse colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 329.00 2.04 1.58 100.0 VMP1-217 retained intron transverse colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 238.00 1.48 1.14 100.0 VMP1-217 retained intron transverse colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 10448.00 64.77 50.09 71.95 VMP1-217 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1170.00 0.08 5.61 100.0 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1086683.84 72.83 5209.88 76.61 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 394602.51 26.45 1891.84 26.73 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 4692.00 0.31 22.49 89.56 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 190.00 0.01 0.91 100.0 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 10.00 0.00 0.05 100.0 C19orf48P-203 retained intron transverse colon (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 498.00 25.15 2.39 100.0 RPS11-206 retained intron transverse colon (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 1159.00 58.54 5.56 100.0 RPS11-206 retained intron transverse colon (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 343567.00 82.68 1647.16 83.89 CARMN-209 lncRNA transverse colon (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1176.00 39.52 5.64 100.0 ENST00000602478 lncRNA transverse colon (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 300.00 52.36 1.44 100.0 PPFIA1P1-201 processed pseudogene transverse colon (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 728.00 47.15 3.49 100.0 SNORD114-21-201 snoRNA transverse colon (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 444.00 28.76 2.13 100.0 SNORD114-21-201 snoRNA transverse colon (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 154.00 53.29 0.74 100.0 SNORD115-40-201 snoRNA transverse colon (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 1029.00 96.35 4.93 100.0 MIR98-201 miRNA transverse colon (Tissue)