ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 46.00 0.07 0.22 100.0 RPL4-202 retained intron transverse colon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 422.00 0.66 2.02 100.0 RPL4-202 retained intron transverse colon (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 79.00 0.04 0.38 100.0 ENST00000563103 lncRNA transverse colon (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 12318.00 82.68 59.06 100.0 RPL4-207 retained intron transverse colon (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 395.00 2.65 1.89 100.0 RPL4-207 retained intron transverse colon (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 99682.00 83.76 477.90 92.15 ENST00000565336 lncRNA transverse colon (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 1891.00 1.59 9.07 23.24 ENST00000565336 lncRNA transverse colon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 3212.00 1.06 15.40 100.0 RBMX-210 retained intron transverse colon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 407.00 0.13 1.95 100.0 RBMX-210 retained intron transverse colon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 2776.00 0.92 13.31 100.0 RBMX-210 retained intron transverse colon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 240832.00 79.49 1154.62 82.43 RBMX-210 retained intron transverse colon (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 2043.00 41.15 9.79 100.0 RPL4-214 retained intron transverse colon (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 1669.00 33.62 8.00 100.0 RPL4-214 retained intron transverse colon (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 100.00 0.53 0.48 100.0 POLG-DT-202 lncRNA transverse colon (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 4402.38 23.35 21.11 36.35 POLG-DT-202 lncRNA transverse colon (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 9125.71 48.40 43.75 76.09 POLG-DT-202 lncRNA transverse colon (Tissue)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 2.00 0.06 0.01 100.0 ENST00000570843 lncRNA transverse colon (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 1052.00 29.32 5.04 100.0 ENST00000570843 lncRNA transverse colon (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 880.00 71.43 4.22 100.0 MIR497HG-207 lncRNA transverse colon (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 15436.00 95.70 74.00 96.64 MIR22HG-212 lncRNA transverse colon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 711.00 1.27 3.41 56.34 SNORD53B-201 snoRNA transverse colon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 49867.00 89.09 239.08 92.01 SNORD53B-201 snoRNA transverse colon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 551.00 0.98 2.64 43.66 SNORD53B-201 snoRNA transverse colon (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 103.00 47.91 0.49 100.0 ENST00000578036 lncRNA transverse colon (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 1921.00 90.10 9.21 100.0 RPL23A-207 protein coding transverse colon (Tissue)