ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 1361.00 2.55 6.53 100.0 RACK1-229 protein coding transverse colon (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 83983.00 38.21 402.64 64.79 RACK1-230 retained intron transverse colon (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 131464.00 59.82 630.28 86.17 RACK1-230 retained intron transverse colon (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 64.00 2.50 0.31 100.0 RNA5SP486-201 rRNA pseudogene transverse colon (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 4847.00 88.47 23.24 100.0 SCARNA5-201 scaRNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 176.00 0.09 0.84 28.57 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 4568.00 2.29 21.90 49.69 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 4727.00 2.36 22.66 100.0 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 556.00 0.28 2.67 100.0 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 23.00 0.01 0.11 100.0 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 518.00 0.26 2.48 100.0 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 141377.00 70.72 677.80 99.1 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 2407.00 1.20 11.54 65.23 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 327.00 0.16 1.57 100.0 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 1445.00 0.72 6.93 78.75 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 579.00 0.29 2.78 100.0 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 27412.00 13.71 131.42 98.27 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 4068.00 75.21 19.50 85.55 MIR3142HG-201 lncRNA transverse colon (Tissue)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 2829.00 84.50 13.56 100.0 SNHG6-204 retained intron transverse colon (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 3461.00 16.79 16.59 100.0 MIR151A-201 miRNA transverse colon (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 14926.00 72.39 71.56 88.69 MIR151A-201 miRNA transverse colon (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 6225.00 99.33 29.84 100.0 DENND3-221 protein coding transverse colon (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 135.00 0.75 0.65 58.95 WDR74-204 protein coding transverse colon (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 1012.00 5.61 4.85 64.54 WDR74-204 protein coding transverse colon (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 94.00 0.52 0.45 41.05 WDR74-204 protein coding transverse colon (Tissue)