ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 402.00 2.83 1.93 100.0 RPL7A-207 protein coding CDS not defined transverse colon (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 6853.00 48.24 32.86 64.01 RPL7A-207 protein coding CDS not defined transverse colon (Tissue)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 3.00 0.02 0.01 100.0 RPL7A-207 protein coding CDS not defined transverse colon (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 398.00 3.34 1.91 17.82 RN7SL2-201 misc RNA transverse colon (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 105.00 0.88 0.50 100.0 RN7SL2-201 misc RNA transverse colon (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 132.00 73.33 0.63 100.0 RGS11-208 retained intron transverse colon (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 8964.00 8.29 42.98 93.57 NOP56-217 protein coding CDS not defined transverse colon (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 87356.00 80.83 418.81 91.02 NOP56-217 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 180660.00 82.02 866.14 95.72 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 10333.00 4.69 49.54 82.7 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 524.00 0.24 2.51 45.06 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 964.00 0.44 4.62 100.0 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 639.00 0.29 3.06 54.94 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2145.00 0.97 10.28 100.0 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 4746.00 2.15 22.75 100.0 RABGGTB-213 protein coding CDS not defined transverse colon (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 16038.00 86.11 76.89 100.0 GNL3-211 retained intron transverse colon (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 1636.00 8.78 7.84 100.0 GNL3-211 retained intron transverse colon (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 236.00 9.53 1.13 100.0 RPL5-205 retained intron transverse colon (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 1302.00 52.58 6.24 100.0 RPL5-205 retained intron transverse colon (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 37.00 1.13 0.18 100.0 ZBED9-AS1-201 lncRNA transverse colon (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 5506.00 92.35 26.40 100.0 RPS3A-206 retained intron transverse colon (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 48946.00 98.77 234.66 100.0 COX7C-203 protein coding transverse colon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 30498.11 57.15 146.22 74.4 RACK1-229 protein coding transverse colon (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 7230.00 13.55 34.66 99.05 RACK1-229 protein coding transverse colon (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 1361.00 2.55 6.53 100.0 RACK1-229 protein coding transverse colon (Tissue)