ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 247.00 1.37 1.18 100.0 WDR74-204 protein coding transverse colon (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 389.00 2.15 1.86 100.0 WDR74-204 protein coding transverse colon (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 667.00 3.69 3.20 74.19 WDR74-204 protein coding transverse colon (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 135.00 0.75 0.65 58.95 WDR74-204 protein coding transverse colon (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 451.00 2.50 2.16 100.0 WDR74-204 protein coding transverse colon (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 6065.00 82.72 29.08 100.0 HSPA8-211 retained intron transverse colon (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 263.00 20.76 1.26 100.0 SCARNA9-201 lncRNA transverse colon (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 130884.00 97.77 627.50 100.0 TAF1D-215 retained intron transverse colon (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 281.00 0.21 1.35 100.0 TAF1D-215 retained intron transverse colon (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 6058.00 76.86 29.04 100.0 HSPA8-215 retained intron transverse colon (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 11.00 0.14 0.05 100.0 HSPA8-215 retained intron transverse colon (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 65.00 0.82 0.31 100.0 HSPA8-215 retained intron transverse colon (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 347.00 16.68 1.66 100.0 RPS2-215 retained intron transverse colon (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 225670.00 75.28 1081.93 76.56 ENST00000548801 lncRNA transverse colon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 3161.00 38.01 15.15 100.0 ENST00000554988 lncRNA transverse colon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 727.00 8.74 3.49 100.0 ENST00000554988 lncRNA transverse colon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 551.00 6.62 2.64 100.0 ENST00000554988 lncRNA transverse colon (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 15590.00 77.14 74.74 100.0 SNHG14-220 retained intron transverse colon (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 3335.00 16.50 15.99 100.0 SNHG14-220 retained intron transverse colon (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 262.00 1.30 1.26 100.0 SNHG14-220 retained intron transverse colon (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 233.00 1.15 1.12 100.0 SNHG14-220 retained intron transverse colon (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 996.00 98.81 4.78 100.0 TEKT4P2-201 transcribed unprocessed pseudogene transverse colon (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 10.00 0.02 0.05 100.0 RPL4-202 retained intron transverse colon (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 660.00 1.04 3.16 100.0 RPL4-202 retained intron transverse colon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 58164.00 91.47 278.86 97.17 RPL4-202 retained intron transverse colon (Tissue)