ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 139.00 79.43 0.67 100.0 MIR652-201 miRNA transverse colon (Tissue)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 1420.00 76.10 6.81 100.0 MIR140-201 miRNA transverse colon (Tissue)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 58.00 28.02 0.28 63.74 MIR106B-201 miRNA transverse colon (Tissue)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 20.00 9.66 0.10 100.0 MIR106B-201 miRNA transverse colon (Tissue)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 71591.00 65.30 343.23 98.53 SNORD83A-201 snoRNA transverse colon (Tissue)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 35184.00 32.09 168.68 95.46 SNORD83A-201 snoRNA transverse colon (Tissue)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 758.00 75.95 3.63 100.0 SNORD41-201 snoRNA transverse colon (Tissue)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 832.00 13.74 3.99 69.22 MT-TF-201 Mt tRNA transverse colon (Tissue)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 246.00 4.06 1.18 33.38 MT-TF-201 Mt tRNA transverse colon (Tissue)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 653.00 10.78 3.13 100.0 MT-TF-201 Mt tRNA transverse colon (Tissue)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 3459.00 35.61 16.58 100.0 MT-TV-201 Mt tRNA transverse colon (Tissue)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 318.00 0.84 1.52 100.0 MT-RNR2-201 Mt rRNA transverse colon (Tissue)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 181.00 0.48 0.87 100.0 MT-RNR2-201 Mt rRNA transverse colon (Tissue)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 1157.00 3.05 5.55 83.18 MT-RNR2-201 Mt rRNA transverse colon (Tissue)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 1857.00 4.90 8.90 84.76 MT-RNR2-201 Mt rRNA transverse colon (Tissue)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 23.00 0.06 0.11 100.0 MT-RNR2-201 Mt rRNA transverse colon (Tissue)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 172.00 0.45 0.82 100.0 MT-RNR2-201 Mt rRNA transverse colon (Tissue)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 38.00 0.10 0.18 100.0 MT-RNR2-201 Mt rRNA transverse colon (Tissue)
ENST00000387365.1 ENST00000387365.1_1_51_+ 1–51 2534.00 34.44 12.15 95.16 MT-TI-201 Mt tRNA transverse colon (Tissue)
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 1668.00 22.67 8.00 100.0 MT-TI-201 Mt tRNA transverse colon (Tissue)
ENST00000387372.1 ENST00000387372.1_1_32_+ 1–32 10010.33 9.35 47.99 27.56 MT-TQ-201 Mt tRNA transverse colon (Tissue)
ENST00000387372.1 ENST00000387372.1_1_55_+ 1–55 35.00 0.03 0.17 100.0 MT-TQ-201 Mt tRNA transverse colon (Tissue)
ENST00000387372.1 ENST00000387372.1_1_36_+ 1–36 55952.00 52.27 268.25 97.02 MT-TQ-201 Mt tRNA transverse colon (Tissue)
ENST00000387372.1 ENST00000387372.1_1_30_+ 1–30 26907.02 25.14 129.00 72.43 MT-TQ-201 Mt tRNA transverse colon (Tissue)
ENST00000387377.1 ENST00000387377.1_1_31_+ 1–31 5378.00 39.30 25.78 81.42 MT-TM-201 Mt tRNA transverse colon (Tissue)