ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385092.1 ENST00000385092.1_6_29_+ 6–29 7969.00 72.84 38.21 96.42 MIR30A-201 miRNA transverse colon (Tissue)
ENST00000385092.1 ENST00000385092.1_47_68_+ 47–68 470.00 4.30 2.25 100.0 MIR30A-201 miRNA transverse colon (Tissue)
ENST00000385092.1 ENST00000385092.1_6_21_+ 6–21 23.00 0.21 0.11 100.0 MIR30A-201 miRNA transverse colon (Tissue)
ENST00000385092.1 ENST00000385092.1_6_25_+ 6–25 2056.00 18.79 9.86 87.41 MIR30A-201 miRNA transverse colon (Tissue)
ENST00000385129.3 ENST00000385129.3_19_40_+ 19–40 234.00 0.70 1.12 100.0 MIR27B-201 miRNA transverse colon (Tissue)
ENST00000385129.3 ENST00000385129.3_61_80_+ 61–80 30823.00 91.62 147.77 95.17 MIR27B-201 miRNA transverse colon (Tissue)
ENST00000385189.3 ENST00000385189.3_25_47_+ 25–47 1530.00 85.00 7.34 100.0 MIR196A2-201 miRNA transverse colon (Tissue)
ENST00000385196.1 ENST00000385196.1_15_36_+ 15–36 123.00 81.46 0.59 100.0 MIR577-201 miRNA transverse colon (Tissue)
ENST00000385199.1 ENST00000385199.1_51_70_+ 51–70 47.00 66.20 0.23 88.68 MIR654-201 miRNA transverse colon (Tissue)
ENST00000385200.3 ENST00000385200.3_33_54_+ 33–54 110.00 94.02 0.53 97.35 MIR204-201 miRNA transverse colon (Tissue)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 683.00 93.31 3.27 100.0 MIR152-201 miRNA transverse colon (Tissue)
ENST00000385219.1 ENST00000385219.1_23_45_+ 23–45 9.00 75.00 0.04 100.0 MIR138-1-201 miRNA transverse colon (Tissue)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 1148.00 86.97 5.50 100.0 MIR30C1-201 miRNA transverse colon (Tissue)
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 55.00 87.30 0.26 100.0 MIR660-201 miRNA transverse colon (Tissue)
ENST00000385236.1 ENST00000385236.1_55_76_+ 55–76 131.00 6.07 0.63 100.0 MIR125B1-201 miRNA transverse colon (Tissue)
ENST00000385236.1 ENST00000385236.1_15_37_+ 15–37 1613.00 74.78 7.73 87.43 MIR125B1-201 miRNA transverse colon (Tissue)
ENST00000385254.3 ENST00000385254.3_16_37_+ 16–37 6.00 31.58 0.03 100.0 MIR493-201 miRNA transverse colon (Tissue)
ENST00000385254.3 ENST00000385254.3_57_78_+ 57–78 11.00 57.89 0.05 100.0 MIR493-201 miRNA transverse colon (Tissue)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 2598.53 16.04 12.46 22.51 MIR182-201 miRNA transverse colon (Tissue)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 10028.02 61.90 48.08 65.72 MIR182-201 miRNA transverse colon (Tissue)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 2003.00 87.39 9.60 89.06 MIR100-201 miRNA transverse colon (Tissue)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 64.00 100.00 0.31 100.0 MIR301A-201 miRNA transverse colon (Tissue)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 1489.00 88.63 7.14 95.57 MIR130A-201 miRNA transverse colon (Tissue)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 182.00 10.83 0.87 40.9 MIR130A-201 miRNA transverse colon (Tissue)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 60399.00 98.26 289.57 98.8 MIRLET7F2-201 miRNA transverse colon (Tissue)