ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 419.89 31.31 17.98 37.52 ENST00000797550 lncRNA GM23248 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 327.98 24.46 14.04 29.31 ENST00000797550 lncRNA GM23248 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 32.00 2.39 1.37 51.61 ENST00000797550 lncRNA GM23248 (Cell line)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 9268.00 84.57 396.80 95.31 MIR181A1HG-212 lncRNA GM23248 (Cell line)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 36.00 0.33 1.54 100.0 MIR181A1HG-212 lncRNA GM23248 (Cell line)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 32.00 78.05 1.37 100.0 C19orf48P-218 lncRNA GM23248 (Cell line)
ENST00000815283.1 ENST00000815283.1_298_361_+ 298–361 1005.00 90.95 43.03 97.86 SNHG18-220 lncRNA GM23248 (Cell line)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 70.00 25.55 3.00 100.0 ENST00000817026 lncRNA GM23248 (Cell line)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 5.00 0.81 0.21 100.0 ENST00000823279 lncRNA GM23248 (Cell line)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 54.96 8.87 2.35 47.38 ENST00000823279 lncRNA GM23248 (Cell line)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 32.79 5.29 1.40 33.8 ENST00000823279 lncRNA GM23248 (Cell line)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 1.00 0.16 0.04 100.0 ENST00000823279 lncRNA GM23248 (Cell line)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 87.46 14.11 3.74 43.51 ENST00000823279 lncRNA GM23248 (Cell line)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 65.83 10.62 2.82 38.72 ENST00000823279 lncRNA GM23248 (Cell line)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 37.00 5.97 1.58 82.22 ENST00000823279 lncRNA GM23248 (Cell line)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 20.91 3.37 0.90 25.49 ENST00000823279 lncRNA GM23248 (Cell line)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 71.11 11.47 3.04 76.46 ENST00000823801 lncRNA GM23248 (Cell line)
ENST00000827714.1 ENST00000827714.1_110_129_+ 110–129 14.00 58.33 0.60 66.67 ENST00000827714 lncRNA GM23248 (Cell line)
ENST00000827714.1 ENST00000827714.1_110_131_+ 110–131 7.00 29.17 0.30 33.33 ENST00000827714 lncRNA GM23248 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 2145.00 77.05 91.83 100.0 GAS5-377 lncRNA GM23248 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 392.00 14.08 16.78 100.0 GAS5-377 lncRNA GM23248 (Cell line)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 2.00 0.07 0.09 100.0 GAS5-377 lncRNA GM23248 (Cell line)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 44.00 1.58 1.88 100.0 GAS5-377 lncRNA GM23248 (Cell line)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 78.00 41.05 3.34 100.0 TAF12-DT-204 lncRNA GM23248 (Cell line)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 11.00 0.13 0.47 100.0 ZFAS1-238 lncRNA GM23248 (Cell line)