ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 122.00 6.48 5.22 100.0 MIR99AHG-262 lncRNA GM23248 (Cell line)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 126.00 40.78 5.39 100.0 MEG8-233 lncRNA GM23248 (Cell line)
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 37.00 11.97 1.58 100.0 MEG8-233 lncRNA GM23248 (Cell line)
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 107.00 31.56 4.58 100.0 MEG8-234 lncRNA GM23248 (Cell line)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 62.00 18.29 2.65 100.0 MEG8-234 lncRNA GM23248 (Cell line)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 172.00 86.43 7.36 100.0 SNHG17-252 lncRNA GM23248 (Cell line)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 12.00 31.58 0.51 100.0 SNHG14-288 lncRNA GM23248 (Cell line)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 519.00 83.44 22.22 100.0 MEG8-240 lncRNA GM23248 (Cell line)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 87.00 9.41 3.72 100.0 ENST00000666735 lncRNA GM23248 (Cell line)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 98.00 10.59 4.20 100.0 ENST00000666735 lncRNA GM23248 (Cell line)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 581.00 77.47 24.87 100.0 MEG8-242 lncRNA GM23248 (Cell line)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 0.65 1.39 0.03 65.34 SNHG14-312 lncRNA GM23248 (Cell line)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 0.93 1.98 0.04 92.91 SNHG14-312 lncRNA GM23248 (Cell line)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 1.00 2.13 0.04 100.0 SNHG14-312 lncRNA GM23248 (Cell line)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 30.00 0.33 1.28 100.0 MEG8-244 lncRNA GM23248 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 36.00 0.39 1.54 100.0 MEG8-244 lncRNA GM23248 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 8811.00 96.50 377.23 99.09 MEG8-244 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 69.00 0.06 2.95 100.0 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 585.00 0.48 25.05 98.98 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 26.56 0.02 1.14 49.19 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 221.00 0.18 9.46 83.71 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 95220.00 78.90 4076.70 99.17 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 31.00 0.03 1.33 70.45 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 6279.00 5.20 268.83 99.65 SNHG1-248 lncRNA GM23248 (Cell line)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 297.00 0.25 12.72 100.0 SNHG1-248 lncRNA GM23248 (Cell line)