ENCFF062TYF
Library Details
| Organism: | Homo Sapiens |
|---|---|
| Biosample: | GM23248 (Cell line) |
| GEO DB ID: | Not available |
| ENCODE Experiment ID: | ENCSR489KNQ |
| Description: | Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning. |
|---|---|
| Author: | Thomas Gingeras, CSHL |
sncRNAs in this Library
| Precursor Transcript ID | sncRNA Name | sncRNA position in precursor | Expression | Expression Fraction | Expression (CPM) | Prominence | Transcript Name | Transcript Type | Biosample |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000387405.1 | ENST00000387405.1_1_24_+ | 1–24 | 135.00 | 66.18 | 5.78 | 100.0 | MT-TC-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_32_+ | 1–32 | 499.00 | 28.65 | 21.36 | 90.07 | MT-TY-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_37_+ | 1–37 | 130.00 | 7.46 | 5.57 | 82.8 | MT-TY-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_50_+ | 1–50 | 1.00 | 0.06 | 0.04 | 100.0 | MT-TY-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_28_+ | 1–28 | 72.00 | 4.13 | 3.08 | 100.0 | MT-TY-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387409.1 | ENST00000387409.1_1_65_+ | 1–65 | 844.00 | 48.45 | 36.13 | 100.0 | MT-TY-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387419.1 | ENST00000387419.1_1_51_+ | 1–51 | 16.00 | 33.33 | 0.69 | 100.0 | MT-TD-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_28_+ | 1–28 | 41.00 | 0.73 | 1.76 | 100.0 | MT-TK-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_58_+ | 1–58 | 1433.00 | 25.41 | 61.35 | 100.0 | MT-TK-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387421.1 | ENST00000387421.1_1_52_+ | 1–52 | 3074.00 | 54.51 | 131.61 | 100.0 | MT-TK-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_20_+ | 1–20 | 154.00 | 19.64 | 6.59 | 71.96 | MT-TS2-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_53_+ | 1–53 | 1.00 | 0.13 | 0.04 | 100.0 | MT-TS2-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387449.1 | ENST00000387449.1_1_26_+ | 1–26 | 332.00 | 42.35 | 14.21 | 100.0 | MT-TS2-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387456.1 | ENST00000387456.1_1_31_+ | 1–31 | 58.00 | 18.53 | 2.48 | 100.0 | MT-TL2-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_1_62_+ | 1–62 | 123.00 | 3.78 | 5.27 | 75.93 | MT-TE-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_40_67_+ | 40–67 | 149.00 | 4.58 | 6.38 | 88.69 | MT-TE-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_39_69_+ | 39–69 | 19.00 | 0.58 | 0.81 | 14.5 | MT-TE-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_1_69_+ | 1–69 | 800.00 | 24.57 | 34.25 | 66.78 | MT-TE-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_1_57_+ | 1–57 | 219.00 | 6.73 | 9.38 | 100.0 | MT-TE-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000387459.1 | ENST00000387459.1_13_67_+ | 13–67 | 90.00 | 2.76 | 3.85 | 100.0 | MT-TE-201 | Mt tRNA | GM23248 (Cell line) |
| ENST00000389680.2 | ENST00000389680.2_2_90_+ | 2–90 | 16.00 | 1.17 | 0.69 | 100.0 | MT-RNR1-201 | Mt rRNA | GM23248 (Cell line) |
| ENST00000389680.2 | ENST00000389680.2_316_354_+ | 316–354 | 92.00 | 6.73 | 3.94 | 100.0 | MT-RNR1-201 | Mt rRNA | GM23248 (Cell line) |
| ENST00000390180.1 | ENST00000390180.1_64_86_+ | 64–86 | 9.00 | 64.29 | 0.39 | 100.0 | MIR454-201 | miRNA | GM23248 (Cell line) |
| ENST00000390225.1 | ENST00000390225.1_30_51_+ | 30–51 | 75.00 | 89.29 | 3.21 | 100.0 | MIR769-201 | miRNA | GM23248 (Cell line) |
| ENST00000390689.3 | ENST00000390689.3_37_51_+ | 37–51 | 93.00 | 75.00 | 3.98 | 100.0 | KRTAP19-1-201 | protein coding | GM23248 (Cell line) |