ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000384881.1 ENST00000384881.1_27_48_+ 27–48 52.00 68.42 0.36 86.67 MIR181C-201 miRNA A375 (Cell line)
ENST00000384881.1 ENST00000384881.1_66_87_+ 66–87 11.00 14.47 0.08 100.0 MIR181C-201 miRNA A375 (Cell line)
ENST00000384892.1 ENST00000384892.1_15_36_+ 15–36 2.00 100.00 0.01 100.0 MIR194-1-201 miRNA A375 (Cell line)
ENST00000384893.1 ENST00000384893.1_52_72_+ 52–72 45.00 77.59 0.31 83.33 MIR128-2-201 miRNA A375 (Cell line)
ENST00000384906.1 ENST00000384906.1_13_34_+ 13–34 562.00 86.33 3.87 88.09 MIR99A-201 miRNA A375 (Cell line)
ENST00000384918.1 ENST00000384918.1_14_35_+ 14–35 29.00 1.64 0.20 85.29 MIR28-201 miRNA A375 (Cell line)
ENST00000384918.1 ENST00000384918.1_54_75_+ 54–75 1617.00 91.61 11.13 94.67 MIR28-201 miRNA A375 (Cell line)
ENST00000384918.1 ENST00000384918.1_54_71_+ 54–71 9.00 0.51 0.06 100.0 MIR28-201 miRNA A375 (Cell line)
ENST00000384958.1 ENST00000384958.1_27_48_+ 27–48 166.00 78.67 1.14 100.0 MIR183-201 miRNA A375 (Cell line)
ENST00000384988.1 ENST00000384988.1_15_36_+ 15–36 1068.00 94.01 7.35 95.96 MIR186-201 miRNA A375 (Cell line)
ENST00000384997.3 ENST00000384997.3_57_79_+ 57–79 1.00 100.00 0.01 100.0 MIR200B-201 miRNA A375 (Cell line)
ENST00000384999.1 ENST00000384999.1_25_46_+ 25–46 1.00 33.33 0.01 100.0 MIR218-1-201 miRNA A375 (Cell line)
ENST00000385004.1 ENST00000385004.1_16_38_+ 16–38 5086.00 92.69 35.00 96.16 MIR181B2-201 miRNA A375 (Cell line)
ENST00000385011.1 ENST00000385011.1_27_48_+ 27–48 9344.00 89.47 64.30 90.04 MIR10B-201 miRNA A375 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_71_+ 51–71 108.85 46.12 0.75 49.25 MIR130B-201 miRNA A375 (Cell line)
ENST00000385018.1 ENST00000385018.1_13_34_+ 13–34 10.00 4.24 0.07 100.0 MIR130B-201 miRNA A375 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_73_+ 51–73 98.57 41.77 0.68 51.07 MIR130B-201 miRNA A375 (Cell line)
ENST00000385019.1 ENST00000385019.1_6_28_+ 6–28 1.00 1.20 0.01 100.0 MIR199A1-201 miRNA A375 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_33_+ 11–33 596.27 78.98 4.10 81.57 MIR93-201 miRNA A375 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_31_+ 11–31 113.62 15.05 0.78 21.16 MIR93-201 miRNA A375 (Cell line)
ENST00000385025.1 ENST00000385025.1_20_41_+ 20–41 83.00 85.57 0.57 93.26 MIR532-201 miRNA A375 (Cell line)
ENST00000385045.1 ENST00000385045.1_20_41_+ 20–41 57.00 90.48 0.39 100.0 MIR15B-201 miRNA A375 (Cell line)
ENST00000385048.3 ENST00000385048.3_16_37_+ 16–37 1.00 100.00 0.01 100.0 MIR150-201 miRNA A375 (Cell line)
ENST00000385050.3 ENST00000385050.3_53_74_+ 53–74 6.00 75.00 0.04 100.0 MIR542-201 miRNA A375 (Cell line)
ENST00000385051.1 ENST00000385051.1_52_74_+ 52–74 48.00 67.61 0.33 100.0 MIR500A-201 miRNA A375 (Cell line)