ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385051.1 ENST00000385051.1_52_74_+ 52–74 48.00 67.61 0.33 100.0 MIR500A-201 miRNA A375 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_21_+ 6–21 51.00 0.52 0.35 100.0 MIR30A-201 miRNA A375 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_25_+ 6–25 64.00 0.65 0.44 57.14 MIR30A-201 miRNA A375 (Cell line)
ENST00000385092.1 ENST00000385092.1_47_68_+ 47–68 822.00 8.35 5.66 100.0 MIR30A-201 miRNA A375 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_29_+ 6–29 8796.00 89.36 60.53 99.46 MIR30A-201 miRNA A375 (Cell line)
ENST00000385129.3 ENST00000385129.3_19_40_+ 19–40 265.00 2.01 1.82 100.0 MIR27B-201 miRNA A375 (Cell line)
ENST00000385129.3 ENST00000385129.3_61_80_+ 61–80 12329.00 93.58 84.84 96.29 MIR27B-201 miRNA A375 (Cell line)
ENST00000385189.3 ENST00000385189.3_25_47_+ 25–47 173.00 89.18 1.19 100.0 MIR196A2-201 miRNA A375 (Cell line)
ENST00000385196.1 ENST00000385196.1_15_36_+ 15–36 28.00 93.33 0.19 100.0 MIR577-201 miRNA A375 (Cell line)
ENST00000385200.3 ENST00000385200.3_33_54_+ 33–54 403.00 97.34 2.77 98.53 MIR204-201 miRNA A375 (Cell line)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 22.00 64.71 0.15 100.0 MIR152-201 miRNA A375 (Cell line)
ENST00000385219.1 ENST00000385219.1_23_45_+ 23–45 40.00 60.61 0.28 100.0 MIR138-1-201 miRNA A375 (Cell line)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 207.00 83.47 1.42 100.0 MIR30C1-201 miRNA A375 (Cell line)
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 10.00 58.82 0.07 100.0 MIR660-201 miRNA A375 (Cell line)
ENST00000385236.1 ENST00000385236.1_15_37_+ 15–37 667.00 28.90 4.59 92.64 MIR125B1-201 miRNA A375 (Cell line)
ENST00000385236.1 ENST00000385236.1_55_76_+ 55–76 1369.00 59.32 9.42 100.0 MIR125B1-201 miRNA A375 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 291.51 8.53 2.01 15.5 MIR182-201 miRNA A375 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 1987.70 58.19 13.68 62.39 MIR182-201 miRNA A375 (Cell line)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 7302.00 77.88 50.25 89.09 MIR100-201 miRNA A375 (Cell line)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 175.00 93.58 1.20 100.0 MIR301A-201 miRNA A375 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 298.00 68.51 2.05 84.9 MIR130A-201 miRNA A375 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 133.00 30.57 0.92 60.73 MIR130A-201 miRNA A375 (Cell line)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 4462.00 99.27 30.70 99.78 MIRLET7F2-201 miRNA A375 (Cell line)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 7.00 33.33 0.05 100.0 MIR652-201 miRNA A375 (Cell line)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 1576.00 68.73 10.85 100.0 MIR140-201 miRNA A375 (Cell line)