ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 422.00 96.35 2.90 100.0 ZMYM2-203 protein coding A375 (Cell line)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 47.00 3.51 0.32 100.0 RNVU1-7-201 snRNA A375 (Cell line)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 7015.00 93.46 48.27 100.0 SNORD24-201 snoRNA A375 (Cell line)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 19.00 79.17 0.13 100.0 Y_RNA.389-201 misc RNA A375 (Cell line)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 21.00 0.04 0.14 100.0 SNORD101-201 snoRNA A375 (Cell line)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 5142.00 9.30 35.38 90.19 SNORD101-201 snoRNA A375 (Cell line)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 49009.00 88.65 337.25 99.13 SNORD101-201 snoRNA A375 (Cell line)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 47.00 0.09 0.32 100.0 SNORD101-201 snoRNA A375 (Cell line)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 58643.00 98.77 403.55 100.0 SNORD37-201 snoRNA A375 (Cell line)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 35171.00 81.50 242.03 95.34 SNORD59A-201 snoRNA A375 (Cell line)
ENST00000384360.1 ENST00000384360.1_1_47_+ 1–47 167.00 56.42 1.15 100.0 SNORA7B-201 snoRNA A375 (Cell line)
ENST00000384390.1 ENST00000384390.1_1_87_+ 1–87 1066.00 91.19 7.34 100.0 SNORD14D-201 snoRNA A375 (Cell line)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 4.00 26.67 0.03 100.0 Y_RNA.555-201 misc RNA A375 (Cell line)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 3466.00 92.72 23.85 95.61 MIR25-201 miRNA A375 (Cell line)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 448.00 84.37 3.08 96.97 MIR99B-201 miRNA A375 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_81_+ 58–81 86.00 51.19 0.59 78.9 MIR23B-201 miRNA A375 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_78_+ 58–78 57.00 33.93 0.39 85.07 MIR23B-201 miRNA A375 (Cell line)
ENST00000384849.1 ENST00000384849.1_26_48_+ 26–48 22.00 20.75 0.15 100.0 MIR199B-201 miRNA A375 (Cell line)
ENST00000384849.1 ENST00000384849.1_65_85_+ 65–85 78.00 73.58 0.54 96.3 MIR199B-201 miRNA A375 (Cell line)
ENST00000384850.1 ENST00000384850.1_17_38_+ 17–38 199.00 95.67 1.37 100.0 MIR30B-201 miRNA A375 (Cell line)
ENST00000384853.1 ENST00000384853.1_36_58_+ 36–58 71.00 82.56 0.49 100.0 MIR181D-201 miRNA A375 (Cell line)
ENST00000384858.1 ENST00000384858.1_27_48_+ 27–48 2.00 66.67 0.01 100.0 MIR215-201 miRNA A375 (Cell line)
ENST00000384863.1 ENST00000384863.1_77_98_+ 77–98 195.00 1.40 1.34 100.0 MIR181A2-201 miRNA A375 (Cell line)
ENST00000384873.3 ENST00000384873.3_16_38_+ 16–38 19603.00 99.41 134.90 99.84 MIR191-201 miRNA A375 (Cell line)
ENST00000384879.1 ENST00000384879.1_15_37_+ 15–37 2.00 28.57 0.01 33.33 MIR149-201 miRNA A375 (Cell line)