ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 1.00 20.00 0.01 100.0 HCN2-201 protein coding A375 (Cell line)
ENST00000261038.6 ENST00000261038.6_3100_3122_+ 3100–3122 9.00 69.23 0.06 100.0 SLC49A4-201 protein coding A375 (Cell line)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 306.00 59.88 2.11 100.0 ATP5MC3-201 protein coding A375 (Cell line)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 236.00 94.78 1.62 100.0 CDC25A-201 protein coding A375 (Cell line)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 8.00 88.89 0.06 100.0 BLOC1S4-201 protein coding A375 (Cell line)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 22.00 15.49 0.15 100.0 ATAD5-201 protein coding A375 (Cell line)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 13.00 13.83 0.09 100.0 SLITRK5-201 protein coding A375 (Cell line)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 10.00 62.50 0.07 100.0 HASPIN-201 protein coding A375 (Cell line)
ENST00000327423.11 ENST00000327423.11_9327_9339_+ 9327–9339 3.00 8.57 0.02 100.0 PRR14L-201 protein coding A375 (Cell line)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 2138.00 98.66 14.71 100.0 ATG101-201 protein coding A375 (Cell line)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 10.00 34.48 0.07 100.0 PRICKLE1-201 protein coding A375 (Cell line)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 101.00 36.46 0.70 100.0 PBLD-204 protein coding A375 (Cell line)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 8365.00 91.71 57.56 99.64 MIRLET7BHG-201 lncRNA A375 (Cell line)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 442.00 4.85 3.04 98.0 MIRLET7BHG-201 lncRNA A375 (Cell line)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 265.00 31.51 1.82 100.0 MIR30E-201 miRNA A375 (Cell line)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 551.00 65.52 3.79 100.0 MIR30E-201 miRNA A375 (Cell line)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 64.00 54.24 0.44 100.0 MIR29A-201 miRNA A375 (Cell line)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 13.00 72.22 0.09 100.0 MIR345-201 miRNA A375 (Cell line)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 2926.00 97.93 20.14 100.0 MIR16-2-201 miRNA A375 (Cell line)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 4.00 8.33 0.03 100.0 MIR340-201 miRNA A375 (Cell line)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 43.00 89.58 0.30 100.0 MIR340-201 miRNA A375 (Cell line)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 183.00 72.05 1.26 100.0 MIR107-201 miRNA A375 (Cell line)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 3.00 100.00 0.02 100.0 MIR381-201 miRNA A375 (Cell line)
ENST00000362154.1 ENST00000362154.1_48_70_+ 48–70 1430.00 87.89 9.84 93.4 MIR103A2-201 miRNA A375 (Cell line)
ENST00000362162.1 ENST00000362162.1_14_38_+ 14–38 96.00 43.84 0.66 100.0 MIR425-201 miRNA A375 (Cell line)