ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 471.00 74.06 3.24 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 413.00 6.07 2.84 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 1316.00 19.35 9.06 92.42 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 8.00 0.12 0.06 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 112.00 1.65 0.77 83.58 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_4_33_+ 4–33 247.00 3.63 1.70 35.8 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_72_+ 1–72 3.00 0.04 0.02 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_49_+ 21–49 18.00 0.26 0.12 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161480566 tRNA-transcript-chr1-161480566_1_32_+ 1–32 7.00 50.00 0.05 100.0 TRNA-TRANSCRIPT-CHR1-161480566 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-16545939 tRNA-transcript-chr1-16545939_1_52_+ 1–52 1817.00 27.58 12.50 86.36 TRNA-TRANSCRIPT-CHR1-16545939 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_1_32_+ 1–32 2.00 8.00 0.01 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_14_32_+ 14–32 7.00 28.00 0.05 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-16727285 tRNA-transcript-chr1-16727285_2_32_+ 2–32 12.00 18.75 0.08 100.0 TRNA-TRANSCRIPT-CHR1-16727285 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-167715488 tRNA-transcript-chr1-167715488_8_31_+ 8–31 104.00 5.43 0.72 100.0 TRNA-TRANSCRIPT-CHR1-167715488 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_18_53_+ 18–53 29.00 0.44 0.20 100.0 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_1_35_+ 1–35 51.00 0.77 0.35 39.84 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_3_32_+ 3–32 7.00 1.75 0.05 5.98 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_1_32_+ 1–32 110.00 27.57 0.76 94.83 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR12-124939966 tRNA-transcript-chr12-124939966_1_53_+ 1–53 41.00 12.77 0.28 100.0 TRNA-TRANSCRIPT-CHR12-124939966 Ala tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_33_+ 1–33 2158.00 31.86 14.85 81.1 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_39_+ 1–39 227.00 3.35 1.56 100.0 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR12-98503503 tRNA-transcript-chr12-98503503_1_33_+ 1–33 12.00 15.58 0.08 100.0 TRNA-TRANSCRIPT-CHR12-98503503 Asp tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-54957869 tRNA-transcript-chr1-54957869_16_32_+ 16–32 9.00 4.95 0.06 100.0 TRNA-TRANSCRIPT-CHR1-54957869 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR15-65869062 tRNA-transcript-chr15-65869062_8_33_+ 8–33 11.00 0.16 0.08 100.0 TRNA-TRANSCRIPT-CHR15-65869062 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 299.00 22.21 2.06 66.3 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA A375 (Cell line)