ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_29_+ 1–29 8.00 0.59 0.06 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_55_+ 1–55 205.00 15.23 1.41 61.75 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_41_+ 1–41 43.00 3.19 0.30 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 7.00 0.52 0.05 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 17.00 1.26 0.12 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 711.00 26.27 4.89 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 406.00 15.00 2.79 54.79 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 369.00 15.62 2.54 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 10.00 0.65 0.07 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 23.00 1.48 0.16 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 793.00 51.16 5.46 92.97 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 192.00 12.39 1.32 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 260.00 13.56 1.79 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 260.00 29.31 1.79 91.55 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 63.00 4.28 0.43 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 1.00 0.66 0.01 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 9.00 5.96 0.06 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 75.00 49.67 0.52 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 45.00 0.52 0.31 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 40.00 64.52 0.28 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_13_+ 1–13 5.00 4.55 0.03 100.0 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_34_+ 1–34 4.00 3.64 0.03 100.0 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 14.00 1.96 0.10 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 141.00 19.75 0.97 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 3.00 11.54 0.02 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA A375 (Cell line)