ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 8.00 21.05 0.06 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 181.00 24.83 1.25 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 7947.00 88.10 54.69 98.63 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 11.00 0.74 0.08 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 163.00 10.99 1.12 61.51 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 136.00 59.91 0.94 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 13.00 4.58 0.09 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 1221.00 87.97 8.40 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 45.00 80.36 0.31 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 4312.00 62.35 29.67 92.24 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 35.00 0.51 0.24 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 41.00 0.56 0.28 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 134.00 52.96 0.92 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 32.00 5.20 0.22 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 512.00 39.11 3.52 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 57.00 4.35 0.39 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 10.00 0.76 0.07 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHRX-3876801 tRNA-transcript-chrX-3876801_1_55_+ 1–55 2.00 66.67 0.01 100.0 TRNA-TRANSCRIPT-CHRX-3876801 Ile tRNA A375 (Cell line)