ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 160.00 0.24 1.10 100.0 GAS5-377 lncRNA A375 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 52647.00 79.50 362.29 100.0 GAS5-377 lncRNA A375 (Cell line)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 29.00 7.75 0.20 100.0 TAF12-DT-204 lncRNA A375 (Cell line)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 367206.00 96.35 2526.90 99.85 ZFAS1-238 lncRNA A375 (Cell line)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 160.00 0.04 1.10 100.0 ZFAS1-238 lncRNA A375 (Cell line)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 534.00 0.14 3.67 100.0 ZFAS1-238 lncRNA A375 (Cell line)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 1418.00 0.37 9.76 100.0 ZFAS1-238 lncRNA A375 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 1055.00 1.98 7.26 100.0 ZFAS1-242 lncRNA A375 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 51077.00 95.99 351.48 100.0 ZFAS1-242 lncRNA A375 (Cell line)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 39.00 28.68 0.27 100.0 ENST00000837997 lncRNA A375 (Cell line)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 30.00 22.06 0.21 100.0 ENST00000837997 lncRNA A375 (Cell line)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 225.00 67.77 1.55 77.59 ENST00000839036 lncRNA A375 (Cell line)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 10.00 10.42 0.07 100.0 ENST00000849527 lncRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 69.00 12.13 0.47 87.34 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 183.00 32.16 1.26 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 99.00 1.10 0.68 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 209.00 74.64 1.44 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 10.00 3.57 0.07 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 71.00 33.18 0.49 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 64.00 12.93 0.44 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 79.00 42.02 0.54 89.77 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 99.00 1.10 0.68 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-159141611 tRNA-transcript-chr1-159141611_3_20_+ 3–20 4.00 19.05 0.03 100.0 TRNA-TRANSCRIPT-CHR1-159141611 Arg tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 71.00 13.68 0.49 92.21 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 98.00 18.88 0.67 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA A375 (Cell line)