ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000785178.1 ENST00000785178.1_899_938_+ 899–938 677.00 37.20 4.66 100.0 ENST00000785178 lncRNA A375 (Cell line)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 67.00 7.10 0.46 82.72 ENST00000786284 lncRNA A375 (Cell line)
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 367.00 38.92 2.53 100.0 ENST00000786284 lncRNA A375 (Cell line)
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 14.00 1.48 0.10 23.33 ENST00000786284 lncRNA A375 (Cell line)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 7548.00 80.19 51.94 93.76 ENST00000788343 lncRNA A375 (Cell line)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 2998.35 38.60 20.63 63.51 ENST00000797550 lncRNA A375 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 642.04 8.27 4.42 13.6 ENST00000797550 lncRNA A375 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 194.00 2.50 1.33 27.99 ENST00000797550 lncRNA A375 (Cell line)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 12842.00 65.65 88.37 94.91 MIR181A1HG-212 lncRNA A375 (Cell line)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 453.00 2.32 3.12 100.0 MIR181A1HG-212 lncRNA A375 (Cell line)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 1059.00 50.72 7.29 100.0 C19orf48P-218 lncRNA A375 (Cell line)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 685.00 32.81 4.71 100.0 C19orf48P-218 lncRNA A375 (Cell line)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 79.00 29.37 0.54 100.0 ENST00000817026 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 2607.00 40.79 17.94 99.16 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 71.00 1.11 0.49 100.0 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 103.33 1.62 0.71 45.93 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 326.41 5.11 2.25 52.99 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 197.00 3.08 1.36 100.0 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 310.01 4.85 2.13 47.99 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 383.42 6.00 2.64 40.66 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 145.00 2.27 1.00 80.56 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 98.67 1.54 0.68 40.27 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 217.57 3.40 1.50 63.99 ENST00000823801 lncRNA A375 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 12306.00 18.58 84.68 100.0 GAS5-377 lncRNA A375 (Cell line)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 43.00 0.06 0.30 100.0 GAS5-377 lncRNA A375 (Cell line)