ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000766977.1 ENST00000766977.1_604_615_+ 604–615 97.00 61.78 0.67 100.0 EHBP1-AS1-210 lncRNA A375 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_437_+ 425–437 8.00 3.64 0.06 100.0 ENST00000770398 lncRNA A375 (Cell line)
ENST00000770398.1 ENST00000770398.1_481_509_+ 481–509 75.00 34.09 0.52 100.0 ENST00000770398 lncRNA A375 (Cell line)
ENST00000770398.1 ENST00000770398.1_425_456_+ 425–456 1.00 0.45 0.01 100.0 ENST00000770398 lncRNA A375 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1611_+ 1591–1611 49.00 7.03 0.34 100.0 ENST00000771298 lncRNA A375 (Cell line)
ENST00000771298.1 ENST00000771298.1_448_479_+ 448–479 1.00 0.14 0.01 100.0 ENST00000771298 lncRNA A375 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 180.00 25.82 1.24 74.38 ENST00000771298 lncRNA A375 (Cell line)
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 9.00 1.29 0.06 100.0 ENST00000771298 lncRNA A375 (Cell line)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 598.00 49.18 4.12 100.0 ENST00000772672 lncRNA A375 (Cell line)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 3.00 0.25 0.02 100.0 ENST00000772672 lncRNA A375 (Cell line)
ENST00000772672.1 ENST00000772672.1_91_113_+ 91–113 12.00 0.99 0.08 100.0 ENST00000772672 lncRNA A375 (Cell line)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 20.00 45.45 0.14 100.0 ENST00000773843 lncRNA A375 (Cell line)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 42.00 0.01 0.29 100.0 SNHG12-223 lncRNA A375 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 81500.00 22.68 560.84 76.88 SNHG12-223 lncRNA A375 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 276275.00 76.87 1901.17 98.69 SNHG12-223 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 156.00 0.01 1.07 100.0 SNHG25-206 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 2522259.00 93.53 17356.74 93.92 SNHG25-206 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 103.00 0.00 0.71 100.0 SNHG25-206 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 214.85 0.01 1.48 53.44 SNHG25-206 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 378.21 0.01 2.60 66.94 SNHG25-206 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 279.88 0.01 1.93 32.54 SNHG25-206 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 697.00 0.03 4.80 97.21 SNHG25-206 lncRNA A375 (Cell line)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 202.00 0.01 1.39 100.0 SNHG25-206 lncRNA A375 (Cell line)
ENST00000778783.1 ENST00000778783.1_84_171_+ 84–171 27.00 71.05 0.19 100.0 ENST00000778783 lncRNA A375 (Cell line)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 1.00 50.00 0.01 100.0 MIR155HG-205 lncRNA A375 (Cell line)