ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 227124.00 29.65 1562.94 97.7 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 48.00 0.01 0.33 57.83 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 13593.00 1.77 93.54 99.82 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 542.00 0.07 3.73 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 70854.00 9.25 487.58 98.82 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 212.00 0.03 1.46 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 24.00 0.00 0.17 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 204.00 0.03 1.40 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 1354.00 0.18 9.32 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 509.00 0.07 3.50 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 4.00 0.00 0.03 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 997.00 0.13 6.86 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 393.00 0.05 2.70 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 70.00 0.01 0.48 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 212307.00 27.72 1460.97 97.05 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 29.00 0.00 0.20 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 129347.00 16.89 890.09 97.27 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 142.00 0.02 0.98 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 29.00 0.00 0.20 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 2.00 0.00 0.01 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 32308.00 4.22 222.33 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 257.00 0.03 1.77 77.64 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 291.55 0.04 2.01 45.7 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 25.00 0.00 0.17 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 206.00 0.03 1.42 56.44 SNHG1-248 lncRNA A375 (Cell line)