ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 38.00 0.00 0.26 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 225.00 0.03 1.55 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 2152.00 0.28 14.81 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 16150.00 33.25 111.14 100.0 SNHG14-315 lncRNA A375 (Cell line)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 17253.00 35.52 118.73 97.33 SNHG14-315 lncRNA A375 (Cell line)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 12921.00 26.60 88.91 91.87 SNHG14-315 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 328.00 0.09 2.26 100.0 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 441.00 0.12 3.03 100.0 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 109682.98 28.82 754.78 35.07 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 90.00 0.02 0.62 100.0 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 79.00 0.02 0.54 100.0 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 260268.84 68.38 1791.02 70.87 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 851.00 0.22 5.86 67.22 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 27.00 0.01 0.19 100.0 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 2117.00 0.56 14.57 100.0 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 1.00 0.00 0.01 100.0 SNHG5-273 lncRNA A375 (Cell line)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 4015.00 1.05 27.63 96.31 SNHG5-273 lncRNA A375 (Cell line)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 196.00 11.12 1.35 64.47 SNHG14-323 lncRNA A375 (Cell line)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 6.00 16.67 0.04 42.86 MEG8-251 lncRNA A375 (Cell line)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 6.00 16.67 0.04 85.71 MEG8-251 lncRNA A375 (Cell line)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 8839.00 76.49 60.82 93.08 SNHG14-336 lncRNA A375 (Cell line)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 2427.00 21.00 16.70 25.86 SNHG14-336 lncRNA A375 (Cell line)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 7474.00 91.90 51.43 97.56 SNHG14-341 lncRNA A375 (Cell line)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 19.00 38.78 0.13 100.0 FMN2-209 protein coding CDS not defined A375 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 13.00 0.77 0.09 33.33 LINC02739-203 lncRNA A375 (Cell line)