ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 297.00 26.98 2.04 100.0 MIR99AHG-262 lncRNA A375 (Cell line)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 1158.00 85.40 7.97 100.0 SNHG14-270 lncRNA A375 (Cell line)
ENST00000661541.1 ENST00000661541.1_446_534_+ 446–534 39.00 0.24 0.27 100.0 SNHG14-275 lncRNA A375 (Cell line)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 256.00 86.49 1.76 97.71 MIR9-2HG-225 lncRNA A375 (Cell line)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 208.00 31.09 1.43 100.0 SNHG14-278 lncRNA A375 (Cell line)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 130.00 19.43 0.89 94.2 SNHG14-278 lncRNA A375 (Cell line)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 2.00 16.67 0.01 100.0 MEG8-234 lncRNA A375 (Cell line)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 572.00 79.33 3.94 100.0 SNHG17-252 lncRNA A375 (Cell line)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 477.00 17.84 3.28 56.58 SNHG14-288 lncRNA A375 (Cell line)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 1832.00 68.51 12.61 87.11 SNHG14-288 lncRNA A375 (Cell line)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 5.00 41.67 0.03 100.0 MEG8-240 lncRNA A375 (Cell line)
ENST00000666022.1 ENST00000666022.1_1_88_+ 1–88 14.00 2.57 0.10 100.0 SNHG14-303 lncRNA A375 (Cell line)
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 1.00 100.00 0.01 100.0 SNHG14-306 lncRNA A375 (Cell line)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 758.00 8.48 5.22 100.0 ENST00000666735 lncRNA A375 (Cell line)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 452.00 5.06 3.11 100.0 ENST00000666735 lncRNA A375 (Cell line)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 9.00 4.11 0.06 100.0 MEG8-242 lncRNA A375 (Cell line)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 458.66 23.28 3.16 26.68 SNHG14-312 lncRNA A375 (Cell line)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 1331.40 67.58 9.16 77.45 SNHG14-312 lncRNA A375 (Cell line)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 27.00 1.37 0.19 100.0 SNHG14-312 lncRNA A375 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 1.00 50.00 0.01 100.0 MEG8-244 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 122.00 0.02 0.84 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 1.00 0.00 0.01 100.0 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 1900.00 0.25 13.07 99.63 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 341.05 0.04 2.35 53.46 SNHG1-248 lncRNA A375 (Cell line)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 334.00 0.04 2.30 85.42 SNHG1-248 lncRNA A375 (Cell line)