ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 33.00 0.02 0.23 100.0 SNHG29-232 lncRNA A375 (Cell line)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 1.00 0.00 0.01 33.33 SNHG29-232 lncRNA A375 (Cell line)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 7927.00 5.34 54.55 100.0 SNHG29-232 lncRNA A375 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 10461.00 7.05 71.99 100.0 SNHG29-232 lncRNA A375 (Cell line)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1.00 0.00 0.01 100.0 SNHG29-232 lncRNA A375 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 8.00 0.11 0.06 100.0 SNHG14-234 lncRNA A375 (Cell line)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 3446.00 45.31 23.71 97.76 SNHG14-234 lncRNA A375 (Cell line)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 5.00 0.07 0.03 100.0 SNHG14-234 lncRNA A375 (Cell line)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 585.00 7.69 4.03 100.0 SNHG14-234 lncRNA A375 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 791.00 10.40 5.44 100.0 SNHG14-234 lncRNA A375 (Cell line)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 1973.00 25.94 13.58 99.15 SNHG14-234 lncRNA A375 (Cell line)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 374.00 3.92 2.57 36.52 ENST00000655317 lncRNA A375 (Cell line)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 1671.00 17.51 11.50 100.0 ENST00000655317 lncRNA A375 (Cell line)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 903.00 9.46 6.21 59.56 ENST00000655317 lncRNA A375 (Cell line)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 1142.00 11.97 7.86 100.0 ENST00000655317 lncRNA A375 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 55.00 8.80 0.38 74.32 LINC01962-202 lncRNA A375 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 237.00 37.92 1.63 100.0 LINC01962-202 lncRNA A375 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 72.00 11.52 0.50 100.0 LINC01962-202 lncRNA A375 (Cell line)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 1286.00 38.14 8.85 98.85 SNHG14-241 lncRNA A375 (Cell line)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 1.00 50.00 0.01 100.0 MEG8-228 lncRNA A375 (Cell line)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 245.00 32.11 1.69 100.0 SNHG14-254 lncRNA A375 (Cell line)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 308.00 20.90 2.12 100.0 SNHG14-261 lncRNA A375 (Cell line)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 844.00 57.26 5.81 91.54 SNHG14-261 lncRNA A375 (Cell line)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 313.00 33.58 2.15 89.17 LIMD1-AS1-204 lncRNA A375 (Cell line)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 663.00 60.22 4.56 92.6 MIR99AHG-262 lncRNA A375 (Cell line)