ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 51.00 56.67 0.35 92.73 FTX-219 lncRNA A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 53.00 3.82 0.36 49.07 CTC1-214 protein coding A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 352.00 25.38 2.42 92.39 CTC1-214 protein coding A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 107.00 7.71 0.74 50.95 CTC1-214 protein coding A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 55.00 3.97 0.38 50.93 CTC1-214 protein coding A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 191.00 13.77 1.31 84.89 CTC1-214 protein coding A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 145.00 10.45 1.00 100.0 CTC1-214 protein coding A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 57.00 4.11 0.39 100.0 CTC1-214 protein coding A375 (Cell line)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 130.00 9.37 0.89 100.0 CTC1-214 protein coding A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 487.00 7.72 3.35 77.06 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 46.00 0.73 0.32 97.87 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 156.00 2.47 1.07 100.0 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 220.00 3.49 1.51 47.21 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 6.00 0.10 0.04 100.0 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 137.00 2.17 0.94 100.0 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 1246.00 19.76 8.57 100.0 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 21.00 0.33 0.14 100.0 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 53.00 0.84 0.36 100.0 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 679.00 10.77 4.67 63.22 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 163.00 2.58 1.12 100.0 ENST00000651540 lncRNA A375 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 1140.00 18.08 7.84 73.98 ENST00000651540 lncRNA A375 (Cell line)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 1139.00 8.13 7.84 100.0 MIRLET7A1HG-203 lncRNA A375 (Cell line)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 127417.00 85.90 876.81 100.0 SNHG29-232 lncRNA A375 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 5.00 0.00 0.03 100.0 SNHG29-232 lncRNA A375 (Cell line)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 38.00 0.03 0.26 100.0 SNHG29-232 lncRNA A375 (Cell line)