ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 117.00 0.01 0.81 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 3131.00 0.21 21.55 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 353.00 0.02 2.43 38.45 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 8771.00 0.58 60.36 99.29 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 443.00 0.03 3.05 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 19.00 0.00 0.13 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 1131.00 0.08 7.78 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1045261.00 69.64 7192.89 99.46 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 297.00 0.02 2.04 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 3581.00 0.24 24.64 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 429.00 0.03 2.95 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 13561.00 0.90 93.32 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 60.00 0.00 0.41 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 29.00 0.00 0.20 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 528.00 0.04 3.63 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 349.00 0.02 2.40 54.96 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 1460.00 0.10 10.05 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 31800.00 2.12 218.83 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 15203.00 1.01 104.62 99.58 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 184239.00 12.28 1267.83 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 53.00 0.00 0.36 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 15249.00 1.02 104.93 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 146844.00 9.78 1010.50 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 474.00 0.03 3.26 100.0 GAS5-230 retained intron A375 (Cell line)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 2.00 2.22 0.01 100.0 FTX-219 lncRNA A375 (Cell line)