ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 103.00 17.37 0.71 100.0 SCARNA4-202 scaRNA A375 (Cell line)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 136.00 58.12 0.94 100.0 ENST00000625572 miRNA A375 (Cell line)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 2301.00 83.64 15.83 100.0 ENST00000628177 snoRNA A375 (Cell line)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 19830.00 96.01 136.46 100.0 ENST00000630615 snoRNA A375 (Cell line)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 27.00 22.31 0.19 100.0 DMRT2-209 protein coding A375 (Cell line)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 57.00 47.11 0.39 100.0 DMRT2-209 protein coding A375 (Cell line)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 13.00 8.50 0.09 100.0 SNORD98-201 snoRNA A375 (Cell line)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 93.00 60.78 0.64 100.0 SNORD98-201 snoRNA A375 (Cell line)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 3027.89 22.15 20.84 24.61 MIR106AHG-201 lncRNA A375 (Cell line)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 5.19 0.04 0.04 64.91 MIR106AHG-201 lncRNA A375 (Cell line)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 1.00 0.01 0.01 100.0 MIR106AHG-201 lncRNA A375 (Cell line)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 5.11 0.04 0.04 63.9 MIR106AHG-201 lncRNA A375 (Cell line)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 1495.00 5.46 10.29 95.34 SNHG14-224 lncRNA A375 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 13176.00 48.09 90.67 97.26 SNHG14-224 lncRNA A375 (Cell line)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 3267.00 11.92 22.48 100.0 SNHG14-224 lncRNA A375 (Cell line)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 6234.00 22.75 42.90 96.31 SNHG14-224 lncRNA A375 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 8.00 0.03 0.06 100.0 SNHG14-224 lncRNA A375 (Cell line)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 157.00 0.57 1.08 33.98 SNHG14-224 lncRNA A375 (Cell line)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 734.00 2.68 5.05 74.97 SNHG14-224 lncRNA A375 (Cell line)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 447.00 1.63 3.08 50.17 SNHG14-224 lncRNA A375 (Cell line)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 2681.37 26.31 18.45 65.35 5S_rRNA.20-201 rRNA pseudogene A375 (Cell line)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 1597.00 25.39 10.99 100.0 HSPA9-211 retained intron A375 (Cell line)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 2813.00 44.73 19.36 81.09 HSPA9-211 retained intron A375 (Cell line)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 61.00 100.00 0.42 100.0 DNM3OS-205 lncRNA A375 (Cell line)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 2827.00 0.19 19.45 100.0 GAS5-230 retained intron A375 (Cell line)