ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 6144.00 15.54 42.28 61.26 RNA5-8SN2-201 rRNA A375 (Cell line)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 187.98 0.48 1.29 57.84 RNA5-8SN2-201 rRNA A375 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 355.00 0.90 2.44 100.0 RNA5-8SN2-201 rRNA A375 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 245.00 0.62 1.69 100.0 RNA5-8SN2-201 rRNA A375 (Cell line)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 468.00 1.18 3.22 100.0 RNA5-8SN2-201 rRNA A375 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 5759.00 14.57 39.63 48.38 RNA5-8SN2-201 rRNA A375 (Cell line)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 136.57 0.35 0.94 42.02 RNA5-8SN2-201 rRNA A375 (Cell line)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 40.00 95.24 0.28 100.0 MIR7974-201 miRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 656.00 0.13 4.51 100.0 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 1334.68 0.27 9.18 32.21 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 413682.00 85.13 2846.72 99.67 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 10.00 0.00 0.07 100.0 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 28257.00 5.81 194.45 86.61 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 2138.00 0.44 14.71 45.98 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 8735.00 1.80 60.11 82.83 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 2918.89 0.60 20.09 70.44 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 69.00 0.01 0.47 100.0 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 5.00 0.00 0.03 100.0 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 30.00 0.01 0.21 100.0 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 902.00 0.19 6.21 100.0 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 4545.24 0.94 31.28 43.46 U2.3-201 snRNA A375 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 4515.65 0.93 31.07 49.3 U2.3-201 snRNA A375 (Cell line)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 269.00 0.06 1.85 100.0 U2.6-201 snRNA A375 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 42.00 0.64 0.29 47.19 ENST00000619323 lncRNA A375 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 6435.00 98.14 44.28 99.21 ENST00000619323 lncRNA A375 (Cell line)