ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 2921.00 2.31 20.36 100.0 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 3137.97 2.48 21.87 31.96 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 11511.00 9.09 80.22 81.49 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 4809.00 3.80 33.51 30.94 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 10973.00 8.67 76.47 100.0 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 3328.00 2.63 23.19 70.6 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 1112.69 0.88 7.75 47.75 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 2116.00 1.67 14.75 33.15 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 262.00 0.21 1.83 100.0 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 10624.29 8.39 74.04 79.93 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 4055.00 3.20 28.26 68.66 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 1291.86 1.02 9.00 44.35 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 17.00 0.96 0.12 100.0 SNORD104-201 snoRNA Karpas-422 (Cell line)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 89.00 5.01 0.62 100.0 SNORD104-201 snoRNA Karpas-422 (Cell line)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 2.00 7.14 0.01 100.0 SNORD115-9-201 snoRNA Karpas-422 (Cell line)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 3384.00 11.85 23.58 83.12 RNA5SP358-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 190.00 0.66 1.32 88.79 RNA5SP145-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 13.00 2.05 0.09 100.0 Y_RNA.105-201 misc RNA Karpas-422 (Cell line)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 411.00 14.35 2.86 100.0 RNY4P9-201 misc RNA Karpas-422 (Cell line)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 539.00 1.19 3.76 100.0 RNU5B-1-201 snRNA Karpas-422 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 413.00 0.91 2.88 16.95 RNU5B-1-201 snRNA Karpas-422 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 14132.00 31.24 98.48 100.0 RNU5B-1-201 snRNA Karpas-422 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 1248.00 2.76 8.70 100.0 RNU5B-1-201 snRNA Karpas-422 (Cell line)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 1820.00 4.02 12.68 100.0 RNU5B-1-201 snRNA Karpas-422 (Cell line)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 278.00 0.61 1.94 100.0 RNU5B-1-201 snRNA Karpas-422 (Cell line)