ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362400.1 ENST00000362400.1_32_95_+ 32–95 45.00 0.07 0.31 83.33 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_45_+ 1–45 38.00 0.06 0.26 100.0 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_23_95_+ 23–95 144.00 0.22 1.00 79.56 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_5_95_+ 5–95 129.00 0.20 0.90 99.23 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_83_+ 1–83 198.00 0.31 1.38 84.26 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 215.00 0.34 1.50 69.81 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 85.00 0.13 0.59 100.0 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_17_95_+ 17–95 54.25 0.08 0.38 68.67 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 12.00 0.02 0.08 21.43 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 292.00 0.46 2.03 100.0 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 37.71 0.06 0.26 61.81 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_83_95_+ 83–95 939.00 1.47 6.54 99.16 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_95_+ 1–95 976.00 1.52 6.80 99.9 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 3616.00 15.00 25.20 100.0 Y_RNA.14-201 misc RNA Karpas-422 (Cell line)
ENST00000362441.1 ENST00000362441.1_2_82_+ 2–82 1.00 4.00 0.01 100.0 SNORD115-34-201 snoRNA Karpas-422 (Cell line)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 780.00 3.86 5.44 100.0 RNU5E-1-201 snRNA Karpas-422 (Cell line)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 37.00 0.13 0.26 15.74 RNA5SP370-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 19858.00 71.31 138.39 100.0 SNORA31-201 snoRNA Karpas-422 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 92.00 0.32 0.64 100.0 RNA5SP389-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 2488.00 8.69 17.34 98.5 RNA5SP389-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 257.00 0.90 1.79 100.0 RNA5SP389-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 122.00 0.43 0.85 56.74 RNA5SP389-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 1291.86 1.02 9.00 44.35 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 2265.00 1.79 15.78 53.51 RNU5A-1-201 snRNA Karpas-422 (Cell line)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 3275.00 2.59 22.82 78.5 RNU5A-1-201 snRNA Karpas-422 (Cell line)