ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000363293.1 ENST00000363293.1_2_82_+ 2–82 108.00 93.91 0.75 100.0 SNORD115-18-201 snoRNA Karpas-422 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 1411.00 23.76 9.83 97.65 RNY4P27-201 misc RNA Karpas-422 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 67.00 1.13 0.47 66.34 RNY4P27-201 misc RNA Karpas-422 (Cell line)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 455.00 12.15 3.17 100.0 Y_RNA.136-201 misc RNA Karpas-422 (Cell line)
ENST00000363608.1 ENST00000363608.1_2_82_+ 2–82 4.00 13.79 0.03 100.0 SNORD115-41-201 snoRNA Karpas-422 (Cell line)
ENST00000363633.1 ENST00000363633.1_2_82_+ 2–82 1.00 3.45 0.01 100.0 SNORD115-5-201 snoRNA Karpas-422 (Cell line)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 209.00 17.55 1.46 100.0 Y_RNA.181-201 misc RNA Karpas-422 (Cell line)
ENST00000363887.1 ENST00000363887.1_2_82_+ 2–82 1.00 4.00 0.01 100.0 SNORD115-16-201 snoRNA Karpas-422 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 3935.00 6.49 27.42 100.0 RNY1-201 misc RNA Karpas-422 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 9510.24 15.68 66.27 56.3 RNY1-201 misc RNA Karpas-422 (Cell line)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 252.00 0.42 1.76 100.0 RNY1-201 misc RNA Karpas-422 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 255.00 0.42 1.78 100.0 RNY1-201 misc RNA Karpas-422 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 8864.86 14.61 61.78 47.54 RNY1-201 misc RNA Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 21.00 0.04 0.15 100.0 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 3381.00 7.16 23.56 100.0 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 49.00 0.10 0.34 100.0 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 71.18 0.15 0.50 43.4 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 1836.80 3.89 12.80 8.62 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 61.00 0.13 0.43 100.0 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 94.52 0.20 0.66 57.29 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 19.00 0.04 0.13 100.0 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 273.00 0.58 1.90 100.0 RNA5SP202-201 rRNA pseudogene Karpas-422 (Cell line)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 35032.00 59.61 244.13 100.0 Y_RNA.234-201 misc RNA Karpas-422 (Cell line)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 2.00 0.00 0.01 100.0 RNA5S9-201 rRNA Karpas-422 (Cell line)
ENST00000364461.1 ENST00000364461.1_2_82_+ 2–82 1.00 100.00 0.01 100.0 SNORD115-23-201 snoRNA Karpas-422 (Cell line)