ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362162.1 ENST00000362162.1_14_35_+ 14–35 1561.00 43.92 10.88 100.0 MIR425-201 miRNA Karpas-422 (Cell line)
ENST00000362168.1 ENST00000362168.1_66_87_+ 66–87 3193.00 68.37 22.25 100.0 MIR210-201 miRNA Karpas-422 (Cell line)
ENST00000362177.3 ENST00000362177.3_43_64_+ 43–64 35365.00 95.32 246.45 96.81 MIR378A-201 miRNA Karpas-422 (Cell line)
ENST00000362181.3 ENST00000362181.3_6_27_+ 6–27 828.00 37.08 5.77 100.0 MIR361-201 miRNA Karpas-422 (Cell line)
ENST00000362195.3 ENST00000362195.3_48_66_+ 48–66 62.00 2.77 0.43 17.22 MIR101-2-201 miRNA Karpas-422 (Cell line)
ENST00000362195.3 ENST00000362195.3_49_70_+ 49–70 1809.00 80.69 12.61 85.86 MIR101-2-201 miRNA Karpas-422 (Cell line)
ENST00000362205.1 ENST00000362205.1_10_31_+ 10–31 8276.00 98.52 57.67 99.15 MIR26A1-201 miRNA Karpas-422 (Cell line)
ENST00000362207.3 ENST00000362207.3_15_35_+ 15–35 79.00 52.67 0.55 100.0 MIR129-2-201 miRNA Karpas-422 (Cell line)
ENST00000362212.1 ENST00000362212.1_61_83_+ 61–83 4.00 80.00 0.03 100.0 MIR342-201 miRNA Karpas-422 (Cell line)
ENST00000362215.3 ENST00000362215.3_44_65_+ 44–65 12949.00 96.27 90.24 97.42 MIR148A-201 miRNA Karpas-422 (Cell line)
ENST00000362215.3 ENST00000362215.3_6_27_+ 6–27 74.00 0.55 0.52 100.0 MIR148A-201 miRNA Karpas-422 (Cell line)
ENST00000362251.4 ENST00000362251.4_12_33_+ 12–33 4275.00 94.56 29.79 97.54 MIR26B-201 miRNA Karpas-422 (Cell line)
ENST00000362252.3 ENST00000362252.3_63_86_+ 63–86 1423.00 72.97 9.92 81.78 MIR148B-201 miRNA Karpas-422 (Cell line)
ENST00000362280.3 ENST00000362280.3_5_26_+ 5–26 3956.00 96.65 27.57 99.2 MIRLET7G-201 miRNA Karpas-422 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_25_+ 6–25 715.00 4.15 4.98 75.5 MIR30D-201 miRNA Karpas-422 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_29_+ 6–29 15692.00 91.03 109.35 98.54 MIR30D-201 miRNA Karpas-422 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_21_+ 6–21 135.00 0.78 0.94 100.0 MIR30D-201 miRNA Karpas-422 (Cell line)
ENST00000362291.1 ENST00000362291.1_15_35_+ 15–35 4.00 100.00 0.03 100.0 MIR126-201 miRNA Karpas-422 (Cell line)
ENST00000362298.3 ENST00000362298.3_42_63_+ 42–63 114.00 36.31 0.79 100.0 MIR374A-201 miRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 215.00 0.34 1.50 69.81 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 85.00 0.13 0.59 100.0 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 12.00 0.02 0.08 21.43 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 292.00 0.46 2.03 100.0 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 37.71 0.06 0.26 61.81 RNA5S12-201 rRNA Karpas-422 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_95_+ 1–95 976.00 1.52 6.80 99.9 RNA5S12-201 rRNA Karpas-422 (Cell line)