ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 1541.00 5.49 10.74 13.11 ENST00000655317 lncRNA Karpas-422 (Cell line)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 4162.00 14.82 29.00 100.0 ENST00000655317 lncRNA Karpas-422 (Cell line)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 13237.00 47.14 92.25 78.48 ENST00000655317 lncRNA Karpas-422 (Cell line)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 214.00 0.76 1.49 100.0 ENST00000655317 lncRNA Karpas-422 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 541.00 5.33 3.77 72.04 LINC01962-202 lncRNA Karpas-422 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 3536.00 34.82 24.64 100.0 LINC01962-202 lncRNA Karpas-422 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 1719.00 16.93 11.98 100.0 LINC01962-202 lncRNA Karpas-422 (Cell line)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 692.00 14.45 4.82 99.43 SNHG14-241 lncRNA Karpas-422 (Cell line)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 17.00 0.94 0.12 100.0 SNHG14-254 lncRNA Karpas-422 (Cell line)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 14.00 0.51 0.10 100.0 SNHG14-261 lncRNA Karpas-422 (Cell line)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 826.00 29.84 5.76 75.3 SNHG14-261 lncRNA Karpas-422 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 47.00 0.40 0.33 100.0 LIMD1-AS1-204 lncRNA Karpas-422 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 33.00 0.28 0.23 100.0 LIMD1-AS1-204 lncRNA Karpas-422 (Cell line)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 2542.00 21.38 17.71 83.13 LIMD1-AS1-204 lncRNA Karpas-422 (Cell line)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 3.00 50.00 0.02 100.0 MIR99AHG-262 lncRNA Karpas-422 (Cell line)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 2.00 33.33 0.01 100.0 MIR99AHG-262 lncRNA Karpas-422 (Cell line)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 24.00 6.25 0.17 100.0 SNHG14-270 lncRNA Karpas-422 (Cell line)
ENST00000661541.1 ENST00000661541.1_446_534_+ 446–534 4.00 0.14 0.03 100.0 SNHG14-275 lncRNA Karpas-422 (Cell line)
ENST00000661688.1 ENST00000661688.1_965_986_+ 965–986 1.00 0.25 0.01 100.0 MIR9-2HG-225 lncRNA Karpas-422 (Cell line)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 279.00 69.23 1.94 95.88 MIR9-2HG-225 lncRNA Karpas-422 (Cell line)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 13.00 0.59 0.09 100.0 SNHG14-278 lncRNA Karpas-422 (Cell line)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 1.00 0.05 0.01 100.0 SNHG14-278 lncRNA Karpas-422 (Cell line)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 5939.00 67.80 41.39 100.0 SNHG17-252 lncRNA Karpas-422 (Cell line)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 272.00 2.48 1.90 46.34 SNHG14-288 lncRNA Karpas-422 (Cell line)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 8880.00 80.82 61.88 98.48 SNHG14-288 lncRNA Karpas-422 (Cell line)