ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 2.00 5.41 0.01 100.0 SNHG14-306 lncRNA Karpas-422 (Cell line)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 3453.00 6.71 24.06 100.0 ENST00000666735 lncRNA Karpas-422 (Cell line)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 2437.00 4.73 16.98 100.0 ENST00000666735 lncRNA Karpas-422 (Cell line)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 64.68 4.73 0.45 33.69 SNHG14-312 lncRNA Karpas-422 (Cell line)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 131.93 9.64 0.92 68.71 SNHG14-312 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 1227.00 0.27 8.55 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 5063.00 1.13 35.28 94.42 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 63.41 0.01 0.44 59.82 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 1897.00 0.42 13.22 91.95 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 91445.00 20.48 637.26 98.28 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 152.00 0.03 1.06 61.04 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 46432.00 10.40 323.58 99.76 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 3115.00 0.70 21.71 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 76601.00 17.16 533.82 98.46 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 1.00 0.00 0.01 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 991.00 0.22 6.91 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 1710.00 0.38 11.92 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 151.00 0.03 1.05 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 61.00 0.01 0.43 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 202.00 0.05 1.41 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 8495.00 1.90 59.20 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 722.00 0.16 5.03 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 547.00 0.12 3.81 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 156602.00 35.08 1091.33 96.81 SNHG1-248 lncRNA Karpas-422 (Cell line)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 74.00 0.02 0.52 100.0 SNHG1-248 lncRNA Karpas-422 (Cell line)