ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 965.00 2.02 6.72 98.67 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 1066.00 2.23 7.43 100.0 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 1141.00 2.39 7.95 35.93 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 143.00 0.30 1.00 100.0 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 429.00 0.90 2.99 100.0 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 3906.00 8.18 27.22 100.0 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 143.00 0.30 1.00 100.0 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 669.00 1.40 4.66 100.0 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 28406.00 59.47 197.96 96.8 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 1734.00 3.63 12.08 100.0 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 1488.00 3.12 10.37 39.54 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 2.00 0.00 0.01 100.0 ENST00000651540 lncRNA Karpas-422 (Cell line)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 912.00 2.89 6.36 100.0 MIRLET7A1HG-203 lncRNA Karpas-422 (Cell line)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 373849.00 93.39 2605.28 100.0 SNHG29-232 lncRNA Karpas-422 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 24.00 0.01 0.17 100.0 SNHG29-232 lncRNA Karpas-422 (Cell line)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 145.00 0.04 1.01 100.0 SNHG29-232 lncRNA Karpas-422 (Cell line)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 6.00 0.00 0.04 100.0 SNHG29-232 lncRNA Karpas-422 (Cell line)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 17686.00 4.42 123.25 100.0 SNHG29-232 lncRNA Karpas-422 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 1861.00 0.46 12.97 100.0 SNHG29-232 lncRNA Karpas-422 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 68.00 1.25 0.47 100.0 SNHG14-234 lncRNA Karpas-422 (Cell line)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 893.00 16.41 6.22 84.01 SNHG14-234 lncRNA Karpas-422 (Cell line)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 68.00 1.25 0.47 100.0 SNHG14-234 lncRNA Karpas-422 (Cell line)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 17.00 0.31 0.12 100.0 SNHG14-234 lncRNA Karpas-422 (Cell line)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 330.00 6.06 2.30 100.0 SNHG14-234 lncRNA Karpas-422 (Cell line)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 43.00 0.79 0.30 100.0 SNHG14-234 lncRNA Karpas-422 (Cell line)